Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5625 111 2e-18 seq2612 105 8e-17 >seq5625 Length=2420 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||||||| ||| | || || || ||||| ||||| || || || | Sbjct 808 GCTTGGCCAATTCGCCGGGCAGCAAAAGACGTACTGCGGTTTGGATTTCCCGACTGGTAA 867 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||| |||| |||| |||||||| | || || |||| | Sbjct 868 TAGTCGAGCGTTTGTTGTAGTGAGCCAAACGGGAGGCCTCGGCAGCAATACGCTCGAAAA 927 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||| | ||||| ||| || ||||| ||| |||| Sbjct 928 TGTCGTTGACAAAGCTGTTCATTATGCTCATCGCCTTTGACGAAATGCCGGTGTCAGGGT 987 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||||||||| ||||| ||| Sbjct 988 GGACCTGCTTGAGCACTTTGTAAATG 1013 >seq2612 Length=29986 Score = 105 bits (116), Expect = 8e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||||||||| |||||| | | ||||| || ||| | || || || || Sbjct 7387 AGAAGCGCACCGATGACATCACATCATGGGATGCCGATTTTCTGAAAGTTGACCAAGGCA 7446 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || ||||| ||||| | || ||||| ||| | || || ||| |||| || || Sbjct 7447 CGCTTTTTGAACTGATCTTGGCGGCCAATTACTTGGATATTAAGGGCTTGCTGGAGCTAA 7506 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | || ||||||||||||||||| || | |||||||| |||||||| || | Sbjct 7507 CCTGCAAGACCGTTGCCAACATGATCAAGGGGAAAACACCCGAGGACATCCGCAAAACGT 7566 Query 1592286 TTAACATCAAG 1592296 | ||||||||| Sbjct 7567 TCAACATCAAG 7577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106461099524371