Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq138 167 2e-36 seq4921 86.0 5e-12 >seq138 Length=13430 Score = 167 bits (184), Expect = 2e-36 Identities = 166/211 (79%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||||| ||||||||| ||||||||||| || || |||||||| ||||| || ||||||| Sbjct 8380 ATCGAACTGCGTTTGGGCGCCCAGCTCACAGCCAAAGTACTTGGTCGGATAGGTGGCCGG 8439 Query 34497 ACGTCCAA--GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 || || | |||| | || | ||||| ||||||||| | ||| || |||||||||||| Sbjct 8440 GCGGCCGATGGCGCGT--GCCACTTCGGCCATGTTGACCAGGACCGTTTTGATGCCGTTG 8497 Query 34555 CCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCG 34612 ||||| || ||||||||||| | ||| |||||||| |||||||| ||||| ||||| Sbjct 8498 CCCTTGCCCTCGACCTTGGCCTGTAGA--CGCGGCATCTTGTAGCGATAGAAGATGTCCG 8555 Query 34613 CCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 || ||||||| || || || ||| |||| Sbjct 8556 TTACGCTGCGGTTCACATTGACGGTCGCCAT 8586 >seq4921 Length=55175 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| ||||| ||||| | |||||||| ||||| ||| | || ||||| Sbjct 52095 AAAATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 52154 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | || || || || ||||||||||| | || ||| Sbjct 52155 TCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAT 52214 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | | || | ||| || || ||||||||||||| | | || | |||| ||| Sbjct 52215 CAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTAC 52274 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || || |||||| ||||| | | ||||| || || Sbjct 52275 AACATCCAGAAGGAGTCGACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 52324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412800024657659