Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5625 127 3e-23 seq2612 105 1e-16 seq248 95.1 2e-13 >seq5625 Length=2420 Score = 127 bits (140), Expect = 3e-23 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| || || || ||||| ||| |||||| |||||| ||||||| ||| Sbjct 769 TGTACTTTGTGACTGCTTTTGTTCCCTCACTGACAGCGTGCTTGGCCAATTCGCCGGGCA 828 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || ||||| ||||| || || || || || ||| ||||| | Sbjct 829 GCAAAAGACGTACTGCGGTTTGGATTTCCCGACTGGTAATAGTCGAGCGTTTGTTGTAGT 888 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| |||||||| | || || |||| |||||||||||||| ||||| Sbjct 889 GAGCCAAACGGGAGGCCTCGGCAGCAATACGCTCGAAAATGTCGTTGACAAAGCTGTTCA 948 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| || || ||||| ||| ||||| |||||||||||||| |||| Sbjct 949 TTATGCTCATCGCCTTTGACGAAATGCCGGTGTCAGGGTGGACCTGCTTGAGCACTTTGT 1008 Query 1485710 AAA 1485712 ||| Sbjct 1009 AAA 1011 >seq2612 Length=29986 Score = 105 bits (116), Expect = 1e-16 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCC--TTTTGCGAG-GTCGACCAA 2035622 || ||||||||||| ||||| | | ||||| ||| |||| || || |||||| Sbjct 7386 GAGAAGCGCACCGATGACATCACATCATGGGAT---GCCGATTTTCTGAAAGTTGACCAA 7442 Query 2035623 CCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGAT 2035682 ||| || ||||| ||||| | || ||||| ||| | || || ||| | | || || Sbjct 7443 GGCACGCTTTTTGAACTGATCTTGGCGGCCAATTACTTGGATATTAAGGGCTTGCTGGAG 7502 Query 2035683 TTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAG 2035742 | ||||||||||| |||||| | |||||||| || | ||||||||||||||||| Sbjct 7503 CTAACCTGCAAGACCGTTGCCAACATGATCAAGGGGAAAACACCCGAGGACATCCGCAAA 7562 Query 2035743 ACCTTTAACATCAAG 2035757 || || ||||||||| Sbjct 7563 ACGTTCAACATCAAG 7577 >seq248 Length=20779 Score = 95.1 bits (104), Expect = 2e-13 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 429033 TCGGGCAAGCCCACCAAGGGCGTCGTGGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGC 429092 || |||||||| |||| || || ||| ||||||||||||||||||| ||||| Sbjct 8983 TCCGGCAAGCCGCTGAAGGCAATCAAGGCGCGTCTCAAGGGCAAGGAGGGCCGTATCCGA 8924 Query 429093 GGCAATTGCATGGGCAAGCGCGTCAACTTTACGGCGCGCGCCGTCATCAGTCCCGACCCC 429152 || ||| |||||||| || || |||| |||| || | ||||||| ||||| ||| Sbjct 8923 GGTAATCTTATGGGCAAACGTGTGGACTTCTCGGCCCGTACGGTCATCACACCCGATCCC 8864 Query 429153 GAAATCGACATTGACGAGGTGGGCGTGCCCTATGAGATCGTCAAGACGCTCACCTTTCCC 429212 | | || || ||||||||||||| || | ||| ||||||||||| Sbjct 8863 AATTTGCGTATCGATCAGGTGGGCGTGCCGCGCTCCATTGCACAGAACCTCACCTTTCCG 8804 Query 429213 GAGCGCGTGACGCCCTT 429229 |||| ||||||||||| Sbjct 8803 GAGCTGGTGACGCCCTT 8787 Score = 87.8 bits (96), Expect = 3e-11 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 431094 ATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATC 431153 || ||||| || ||||||||| |||| |||||||||||||| ||||| || |||||||| Sbjct 7394 ATGGGCGGTCGTGAGGGTCTCATCGATACGGCCGTCAAGACAGCCGAAACCGGCTACATT 7335 Query 431154 CAGCGTCGGTGCATCAAATCGATGGAGAGCCTGCAGATCAAGCGCGGCGGCCTCGTGCGC 431213 |||||||| ||||| | |||||| | || | |||| || ||| |||||| Sbjct 7334 CAGCGTCGTCTAATCAAGGCTATGGAGTCCGTGATGGTCAACTACGATGGCACCGTGCGT 7275 Query 431214 AAC 431216 ||| Sbjct 7274 AAC 7272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915367427002457