Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq134 111 1e-19 seq5580 96.9 2e-15 >seq134 Length=44313 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 10/219 (5%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| ||||||||| ||||| ||||| || | | | || |||| Sbjct 28867 CAGAACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATC 28926 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 28927 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 28986 Query 34885 GTTTATTTTTTGTTTGAC-----GGATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939 | || || || || |||| ||||| | | ||| || || | ||| Sbjct 28987 CTGGATCTTGGCCTTAACATTCTCGATGGTATCGGAT-----GGCTCCACCTCCAAGGTG 29041 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||||| || || | |||||| || |||||||||||| Sbjct 29042 ATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 29080 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||||||||| ||||| ||||| || | | || |||| Sbjct 29096 AGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCC 29155 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 29156 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 29215 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || || | ||| |||| Sbjct 29216 TGGATCTTGGCCTTAAC--ATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGG 29273 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || | |||||| || |||||||||||| Sbjct 29274 TCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 29308 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||||||||| ||||| ||||| || | | || |||| Sbjct 29473 AGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCC 29532 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 29533 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 29592 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || || | ||| |||| Sbjct 29593 TGGATCTTGGCCTTAAC--ATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGG 29650 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || | |||||| || |||||||||||| Sbjct 29651 TCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 29685 Score = 102 bits (112), Expect = 5e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || | | |||| |||| Sbjct 29701 AGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCC 29760 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || |||||||||| || ||||| ||| | || | ||||||||||| Sbjct 29761 TCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 29820 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || || | ||| |||| Sbjct 29821 TGGATCTTGGCCTTAAC--ATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGG 29878 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | |||||| || ||||||||||| Sbjct 29879 TCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 29912 >seq5580 Length=51276 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| || || ||||| || ||| |||| |||| ||||| ||||| || ||||| Sbjct 19527 CTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAA 19468 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || ||||| ||| | || | || || ||||| | || || ||| || | Sbjct 19467 AATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTAAC--A 19410 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || | ||||| |||| || |||||||| ||||||||||| ||| Sbjct 19409 TTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTT 19350 Query 34964 ACAAAGATCTGCAT 34977 ||||| || ||||| Sbjct 19349 ACAAAAATTTGCAT 19336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325660001004797