Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4921 140 2e-28 seq5580 127 2e-24 seq134 104 2e-17 >seq4921 Length=55175 Score = 140 bits (154), Expect = 2e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||||||||| || | || || || || || ||||| || |||| | Sbjct 52324 CCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 52265 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| ||| | ||||| | |||||||| || ||| Sbjct 52264 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGTGGA 52205 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||||||||| | ||| |||||| | || | |||||||| | || || Sbjct 52204 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 52145 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || || || ||||| || | |||||| ||||| || |||||||| Sbjct 52144 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATTTT 52095 >seq5580 Length=51276 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||||||| | ||||| ||||| || || || || || | || ||||||| | Sbjct 19550 CGGAGCACCAAATGCAAAGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCA 19491 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | ||||| | |||||||| || ||||| || |||||| Sbjct 19490 TCTTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTG 19431 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || ||| ||| | || | || || || |||| || |||||||| || Sbjct 19430 TCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 19371 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | |||||| ||||| || ||||| Sbjct 19370 GTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 19336 >seq134 Length=44313 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| |||||||| || | ||||| || || || ||||| || || | Sbjct 29686 CCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 29745 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | || |||||||| | ||||| | |||||||| || ||| Sbjct 29746 AAGGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGA 29805 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || ||| | || | || || || | || || Sbjct 29806 ATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACC 29865 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || || || |||||||| ||||| || || || |||||||| || Sbjct 29866 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATATT 29915 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || |||| |||||| || || || || || ||||| || || | Sbjct 29458 CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 29517 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || ||||| || | ||||| | |||||||| || ||| Sbjct 29518 AAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 29577 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || ||| | || | || || || | || || Sbjct 29578 ATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACC 29637 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || |||||||| ||||| || || || |||||||| Sbjct 29638 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 29684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385180406380083