Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq134 122 8e-23 seq5580 109 5e-19 seq4921 98.7 1e-15 >seq134 Length=44313 Score = 122 bits (134), Expect = 8e-23 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| ||| || || | | | ||||| |||| Sbjct 29104 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCA-TCCTCCAGCT 29162 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | |||||||| || || || ||||| |||||||| ||||| Sbjct 29163 GCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCT 29222 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| || |||| |||||||| || | ||||| ||| ||||| | Sbjct 29223 TGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAG 29282 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || ||||| ||||||||| Sbjct 29283 TCAAGGTCTTGACGAAGATCTGCATG 29308 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || || | | | ||||| ||||||||||| Sbjct 28883 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCA-TCCTCCAGCTGCTTGCC 28941 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||| || || || ||||| |||||||| |||||| ||| Sbjct 28942 GGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 29001 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | || |||| |||||||| || | ||||| ||| ||||| |||| || Sbjct 29002 AACATTCTCGATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGT 29061 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 29062 CTTGACGAAGATCTGCATG 29080 Score = 116 bits (128), Expect = 4e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| ||| || || | | | ||||| |||| Sbjct 29481 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCA-TCCTCCAGCT 29539 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | |||||||| || || || || || |||||||| ||||| Sbjct 29540 GCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCT 29599 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| || |||| |||||||| || | ||||| ||| ||||| | Sbjct 29600 TGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAG 29659 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || ||||| ||||||||| Sbjct 29660 TCAAGGTCTTGACGAAGATCTGCATG 29685 >seq5580 Length=51276 Score = 109 bits (120), Expect = 5e-19 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||||||||| |||||||| || | ||| ||| | || || || Sbjct 19541 AAATGCAAAGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCA-TCTTCCAG 19483 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| |||| | |||||||| || ||||| || ||||| ||||| ||| Sbjct 19482 CTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGAT 19423 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | || |||| | | | ||| | || || | || || || || | |||| ||| || | Sbjct 19422 C-TTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTAC 19364 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || |||||||| ||||| ||||| Sbjct 19363 CCGTGAGGGTTTTTACAAAAATTTGCAT 19336 >seq4921 Length=55175 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | ||| | | | ||||| ||||||||||| Sbjct 52294 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCA-TCCTCCAGCTGCTTGCC 52236 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | |||||||| || || || || ||||| ||||| ||| || ||| Sbjct 52235 GGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCCTT 52176 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| | |||||| || || | ||||| ||| |||||||| || || Sbjct 52175 GACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGT 52116 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || || ||||| Sbjct 52115 TTTCACAAAGATTTGCAT 52098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483370868674120