Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq134 89.7 1e-12 >seq134 Length=44313 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| ||||| ||||| || || Sbjct 29304 CAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCCGAT 29245 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| || || || Sbjct 29244 ACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 29185 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| |||||| | |||||| |||| |||||| || Sbjct 29184 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAACATC 29125 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || ||||| || ||| Sbjct 29124 CAGAAGGAGTCGACCCTTCATCTGGTT 29098 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| ||||| ||||| || || Sbjct 29681 CAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCCGAT 29622 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| || || || Sbjct 29621 ACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 29562 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| |||||| | |||||| |||| |||||| || Sbjct 29561 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAACATC 29502 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || ||||| || ||| Sbjct 29501 CAGAAGGAGTCGACCCTTCATCTGGTT 29475 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| ||||| ||||| || || Sbjct 29076 CAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCCGAT 29017 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| || || || Sbjct 29016 ACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 28957 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| |||||| | || ||| |||| |||||| || Sbjct 28956 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACCTTGTCCGACTACAACATC 28897 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| ||| | ||| | ||| || | || || Sbjct 28896 CAGAAGGAGTCCACTTTGCACTTGGTTCTGCGTCTGCG 28859 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| || ||||| || ||||| ||||||| || ||||| | |||||| | |||||| || Sbjct 29098 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 29157 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||| ||||||||||| | || || ||| Sbjct 29158 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGA 29191 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| || ||||| || ||||| ||||||| || ||||| | |||||| | |||||| || Sbjct 29475 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 29534 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||| ||||||||||| | || || ||| Sbjct 29535 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGA 29568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181695681001223