Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq134 100 3e-16 seq5580 89.7 5e-13 >seq134 Length=44313 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||| || | | ||||| || || |||||||||||| || ||| Sbjct 28858 ACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGT 28917 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || |||| |||| | |||||| |||||||| || ||||| Sbjct 28918 ACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCC 28977 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | ||||||| |||||||| || | Sbjct 28978 CTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCCACCTCCAA 29037 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||| || || | ||| ||||||||| Sbjct 29038 GGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 29080 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | | | ||||| || || |||||||||||| || || Sbjct 29086 ACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGT 29145 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || |||| |||| | |||||| |||||||| || ||||| Sbjct 29146 ACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCC 29205 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | ||||||| |||||||| || | Sbjct 29206 CTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAA 29265 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||| || || | ||| ||||||||| Sbjct 29266 GGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 29308 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | | | ||||| || || |||||||||||| || || Sbjct 29463 ACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGT 29522 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || |||| |||| | |||||| |||||||| || || || Sbjct 29523 ACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACC 29582 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | ||||||| |||||||| || | Sbjct 29583 CTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAA 29642 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||| || || | ||| ||||||||| Sbjct 29643 GGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 29685 >seq5580 Length=51276 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||||||| | | |||||||| || || |||||||| | ||| Sbjct 19557 ACGCAGGCGGAGCACCAAATGCAAAGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGT 19498 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | | || | |||||| ||||||||||| || || Sbjct 19497 GCGACCATCTTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCC 19438 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || || || ||| | | || | ||||| | ||| || || || | Sbjct 19437 TTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAG 19378 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| || || ||||||| ||||| ||||| Sbjct 19377 AGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 19336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476561972020680