Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5625 91.5 2e-12 seq248 86.0 9e-11 >seq5625 Length=2420 Score = 91.5 bits (100), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| |||||||||||||| ||||| |||| || | | ||| || | Sbjct 1012 ATTTACAAAGTGCTCAAGCAGGTCCACCCTGACACCG----GCATTTCGTCAA--AGGCG 959 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| |||||||||||||| |||| || || | |||||||| Sbjct 958 ATGAGCATAATGAACAGCTTTGTCAACGACATTTTCGAGCGTATTGCTGCCGAGGCCTCC 899 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | || |||||| ||| || || || || || ||||| ||||| || Sbjct 898 CGTTTGGCTCACTACAACAAACGCTCGACTATTACCAGTCGGGAAATCCAAACCGCAGTA 839 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | ||| ||||||| |||||| |||||| ||| ||||| || Sbjct 838 CGTCTTTTGCTGCCCGGCGAATTGGCCAAGCACGCTGTCAGTGAGGGAAC 789 >seq248 Length=20779 Score = 86.0 bits (94), Expect = 9e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1818075 AAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACC 1818134 ||||||||||| |||| ||||||||||| ||| | || |||||||||||| Sbjct 8787 AAGGGCGTCACCAGCTCCGGAAAGGTGAGGTTCTGTGCAATGGAGCGCGGCACGCCCACC 8846 Query 1818135 TCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGC 1818194 | || || | | ||| ||||| ||||||| | || || | |||| || || Sbjct 8847 TGATCGATACGCAAATTGGGATCGGGTGTGATGACCGTACGGGCCGAGAAGTCCACACGT 8906 Query 1818195 TTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCACGAGGCCC 1818254 |||||||| ||| || ||||| | ||||||||||||||||| ||| || || || Sbjct 8907 TTGCCCATAAGATTACCTCGGATACGGCCCTCCTTGCCCTTGAGACGCGCCTTGATTGCC 8966 Query 1818255 TTGGTGGGCTTGCCCGA 1818271 || |||||||| || Sbjct 8967 TTCAGCGGCTTGCCGGA 8983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177014218462606