Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6467 109 4e-19 >seq6467 Length=13775 Score = 109 bits (120), Expect = 4e-19 Identities = 344/528 (65%), Gaps = 24/528 (5%) Strand=Plus/Minus Query 40858 GGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAAT 40917 ||| || || ||||| ||||| ||||||||||| |||| ||| || ||||| || | | Sbjct 9238 GGGCTGTCGGGGATCTGGGTCCAGTTTATGGATTCCAGTGGCGTCACTTTGGCGCCGAGT 9179 Query 40918 ATGACACT----ATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTT 40973 || |||| ||| || ||||| ||| | || || || |||||||| || Sbjct 9178 ATCGCACTTGCGATG-AC---GATTACACCGGCCAGGGTATTGACCAATTACAACAAGTG 9123 Query 40974 ATAGATACGATTAAATCCGATCCC---GATAGCCGACGTATAATATTGTGCGCGTGGAAC 41030 ||| |||||||| | | ||||| ||| || || || || ||| ||| ||||| Sbjct 9122 ATACATACGATTCGAACTAATCCCTCGGAT---CGTCGCATTATCATGTCCGCCTGGAAT 9066 Query 41031 CCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTT 41090 || | ||| ||| ||||| | || || || |||| || |||||| | || Sbjct 9065 CCGATGGATATACCCAAAATGGCGCTACCGCCGTGCCATTGCCTAGTTCAGTTCTTTGTC 9006 Query 41091 TG------CAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTA 41144 | ||| || ||| |||| || || | ||||| | | ||||||||| || Sbjct 9005 TCGCAGTCCAAGGGCGAATTGTCCTGCCAGCTATATCAGCGCAGTGCTGACATGGGCCTC 8946 Query 41145 GGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACC 41204 || || || || ||||| || || ||||||||||| ||| | || || || || || Sbjct 8945 GGCGTTCCCTTCAACATTGCCTCCTACGCTCTGCTCACCTATTTAATAGCCCATGTGACG 8886 Query 41205 AATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCAC 41264 | | || || || ||||| | ||||| |||| |||| || |||| | || || Sbjct 8885 GGTCTGAAGCCCGGCGAATTCATCCACACCATAGGCGATGCTCACGTTTATCTCAACCAT 8826 Query 41265 ATAGAGCCGTT--AACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTA 41322 ||||| ||| | | ||| || | | ||| | || | || ||||| | ||| | Sbjct 8825 ATAGAACCGCTGGAGCAG--CAGATAAAACGTAGCCCCAAGCCCTTTCCCAAGCTCAACA 8768 Query 41323 TTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTG 41370 |||| ||| ||| ||| ||||| || ||| || ||| ||| ||| Sbjct 8767 TTAAGCGCCAGGTTACAAATATTGAGGACTTTCGCTACGAAGATCTTG 8720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397415974069315