Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6717 107 2e-18 >seq6717 Length=26621 Score = 107 bits (118), Expect = 2e-18 Identities = 285/430 (66%), Gaps = 8/430 (2%) Strand=Plus/Minus Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335 |||| || ||||| ||||| | || ||||| || |||||||| | | || || || Sbjct 993 AACCAGTGCCGATGCCCTCGGCGCCATTCACCAGTACCATGGGTATAATGGGAATATACC 934 Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395 | |||||||||| | ||||||| || || ||| | || | |||||||| || Sbjct 933 AAATTGGCTCAATGCGCTGACCATCATCCACCTGATACTGCAGCAGGGGATCATCCAACG 874 Query 168396 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCT--CGTTTG-AG 168452 ||| | |||| || | | | | ||| || ||||| | || | | || Sbjct 873 GATGATAGATGAGACGTGTTAGCGGCGACATCAATGTGAAAATATAACGAGCGCTCGCAG 814 Query 168453 ACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 168512 | |||||| ||||| ||||||| ||||| |||||||| | |||||| | | ||||| Sbjct 813 A---ATCCTTGCCACCAGTGAGACGTGTACCGAACTGACCGCGCGGCTCCAACAAATTGA 757 Query 168513 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGCGAGAGAGACT 168571 |||||||||| |||| | | | ||||| || ||||| || || || || || | Sbjct 756 TATTGTTTGAGCCCACAAAATTCTGTGCCAAATTCACAATGGTCATCTGC-AGGGACATC 698 Query 168572 TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATC 168631 || ||||| || || || | | || || || | ||| ||| || |||||||| | | Sbjct 697 TCGCCGTGATGATAGGCTGACATTTCAGCCACCGAACCCGACAATTGGGCCACTTTTACC 638 Query 168632 TCATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGA 168691 ||| ||| || | |||||| | |||| |||||||| || ||||| || Sbjct 637 TCACGCTTATCGTTACGCTTGAAGCACGTAAACATGACCTTGCGCTGACCGGGCTTAAGG 578 Query 168692 CCATCCGCCA 168701 |||||| ||| Sbjct 577 CCATCCACCA 568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583200556450120