Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5580 176 1e-38 seq4921 138 3e-27 seq846 120 9e-22 >seq5580 Length=51276 Score = 176 bits (194), Expect = 1e-38 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | ||| | ||| |||||||| || ||||| || ||||| Sbjct 19562 CCACCACGCAGGCGGAGCACCAAATGCAAAGTGGACTCTTTCTGGATATTGTAGTCAGAA 19503 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || |||||||| || || || ||||| || || | ||| |||||||| |||||| Sbjct 19502 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGA 19443 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 ||||||||||| ||||| || || ||||| ||||| || || | ||| || ||||| || Sbjct 19442 ATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACC 19383 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || |||||||||||||| ||||| Sbjct 19382 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 19336 >seq4921 Length=55175 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || | || | ||| ||||| || || || || || || Sbjct 52327 ATACCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCC 52268 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| || || || || || |||||||| | ||| |||||||| || Sbjct 52267 GAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGT 52208 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| |||||||| || || |||||||| || ||||| || || | ||||| || || Sbjct 52207 GGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCG 52148 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || | || | ||||| ||||| || ||||| ||||| || |||||| Sbjct 52147 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATT 52097 >seq846 Length=34594 Score = 120 bits (132), Expect = 9e-22 Identities = 425/652 (65%), Gaps = 23/652 (4%) Strand=Plus/Plus Query 349256 CGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTT 349315 || || || || ||||| || ||||| |||||| | | ||||| || || || || ||| Sbjct 20071 CGCGTTGAGATTATTGCCAACGATCAGGGTAACCGCATCACGCCCTCCTATGTGGCCTTT 20130 Query 349316 AC---CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTG-CTGCTAATCC 349371 || ||| |||||| ||||||||||| | || || |||||| ||| | | ||||| Sbjct 20131 ACGGCCGATGGCGAGCGTCTGATTGGTGATGCCGCCAAGAATCAA-CTGACCACAAATCC 20189 Query 349372 AAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACA--AATCT 349429 ||||||| || |||||||| || || || ||||| | | || || | ||| | Sbjct 20190 CGAAAATACCGTCTTTGATGCGAAACGTCTGATTGGACGCGAATGGTCCGATACGAATGT 20249 Query 349430 ACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCA 349489 || | ||| | ||| || || || | || ||| | |||| || | ||| Sbjct 20250 GCAGCAC--GATATCAAATTCTTCCCATTCAAAGTGGTTG-AGAAGAACTCGA--AGCCA 20304 Query 349490 ---ATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCA 349546 || | || | | || | || | ||| | | ||| ||||| || || || Sbjct 20305 CACATCAGTGTCGATACATCGCAGGGCGC-CAAGATC--TTTGCGCCCGAGGAGATCTCC 20361 Query 349547 TCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACT 349606 | |||||| | | || |||||||||| || ||||| ||| | || | | || || Sbjct 20362 GCCATGGTTCTGGGCAAGATGAAGGAAACCGCCGAAGCCTATCTGGGCAAGAAGGTCACC 20421 Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 | |||||| | ||||| || ||||| || || ||||||||||| || || || ||| Sbjct 20422 CACGCTGTTGTCACTGTGCCCGCCTACTTCAACGATGCCCAGCGCCAGGCGACCAAGGAT 20481 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 || || |||||| || | | || | | || || ||||| || || || || || Sbjct 20482 GCGGGTGTCATTGCCGGTCTGCAGGTGATGCGCATCATCAATGAGCCGACAGCGGCTGCC 20541 Query 349727 ATTGCATATGGGCTTGATAA-AATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTT 349785 |||||||| || || || || || ||| | || || ||| | || |||| ||||| Sbjct 20542 ATTGCATACGGTCTGGACAAGAAGGAGGG----CGAGAAGAATGTGCTCGTTTTCGATTT 20597 Query 349786 AGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAA 349845 || || || || || ||||| || || || || | || | || | || || || Sbjct 20598 GGGCGGCGGCACCTTCGATGTCTCCCTGCTGACCATCGACAATGGCGTCTTCGAGGTGGT 20657 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTC 349897 || || ||||| || ||| | ||||| || || |||||| | ||| || Sbjct 20658 TGCCACCAACGGTGACACTCATTTGGGTGGCGAGGACTTTGATCAGCGTGTC 20709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515093980490189