Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6717 149 7e-31 seq5758 82.4 8e-11 >seq6717 Length=26621 Score = 149 bits (164), Expect = 7e-31 Identities = 213/300 (71%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| |||| |||||||||||||| ||||| |||||||| || Sbjct 838 GTGAAAATATAACGAGCGCTCGCAGAATCCTTGCCACCAGTGAGACGTGTACCGAACTGA 779 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||||||||| | || | ||||| | ||||||||| || || ||||| || ||| Sbjct 778 CCGCGCGGCTCCAACAAATTGATATTGTTTGAGCCCACAAAATTCTGTGCCAAATTCACA 719 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || ||| | ||| || || ||||| || | | || ||||| | ||| Sbjct 718 ATGGTCATCTGCAGGGACATCTCGCCGTGATGATAGGCTGACATTTCAGCCACCGAACCC 659 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 | || || ||||| || | || | | ||| ||||| ||| | | | || ||| Sbjct 658 GACAATTGGGCCACTTTTACCTCACGCTTATCGTTACGCTTGAAGCACGTAAACATGACC 599 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCCTCA 117604 |||||||||| ||||| || |||||| ||| || || ||||| | | ||||| || Sbjct 598 TTGCGCTGACCGGGCTTAAGGCCATCCACCAGACTGGGTATGGAACGTTCGTTGTCCGCA 539 Score = 93.3 bits (102), Expect = 5e-14 Identities = 299/457 (65%), Gaps = 14/457 (3%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTA--AA 151933 || || ||||||||||| || || || ||||| | ||| || | ||| || || || Sbjct 991 CCAGTGCCGATGCCCTCGGCGCCATTCACCAGTACCATGGGTATAATGGGAATATACCAA 932 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | | ||||| | | ||||| ||||||| | || | || | || || || || Sbjct 931 ATT--GGCTCAATGCGCTGACCATCATCCACCTGATACTGCAGCAGGGGATCATCCAACG 874 Query 151994 GATCGAATATCCGTCGAGTCATAGG--AC-TCAAACGCGTGAAGATGTATCGGGAGCTGG 152050 ||| | || | || || | || || |||| ||||| || || || | ||| | Sbjct 873 GATGATAGATGAGACGTGTTAGCGGCGACATCAAT---GTGAAAATATAACGAGCGCTCG 817 Query 152051 CCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGA 152110 | | |||||||||||| | || || || || ||||| || ||||| | | |||| Sbjct 816 CAGAATCCTTGCCACCAGTGAGACGTGTACCGAACTGACCGCGCGGCTCCAACAAATTGA 757 Query 152111 GGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTT 152170 ||||| | |||||| |||||||| |||||||||||||| || |||||| | | Sbjct 756 TATTGTTTGAGCCCACAAAATTCTGTGCCAAATTCACAATGGTCATCTGCAGGGACATCT 697 Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230 | ||||| ||||| || | | || || | | |||| ||| || ||||| || | | Sbjct 696 CGCCGTGATGATAGGCTGACATTTCAGCCACCGAACCCGACAATTGGGCCACTTTTACCT 637 Query 152231 CCGTCGTCAGGTTCTTCTTGAGACAGGCGTAA--ATCACCTTGCGCTGGGATGGTTTCAA 152288 | | | ||| ||||| || ||||| || ||||||||||| || || | Sbjct 636 CACGCTTATCGTTACGCTTGAAGCA--CGTAAACATGACCTTGCGCTGACCGGGCTTAAG 579 Query 152289 ACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 || ||||||| || || ||||| | | ||||| Sbjct 578 GCCATCCACCAGACTGGGTATGGAACGTTCGTTGTCC 542 >seq5758 Length=62776 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/146 (74%), Gaps = 8/146 (5%) Strand=Plus/Minus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGG---AC 158995 ||| ||| || || | ||||||||||||||||| ||||| || || || |||| | Sbjct 7673 CAACAAATTCACGCACACTGTGCGTCTCTCCAGTGGCAATTACGAAATCGGCTGGCGCAT 7614 Query 158996 CGGGCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATC-CTGCGCGTGACCCCAGTCG 159054 || |||| ||||| | |||||||||||| || || || ||| || ||||||||||| Sbjct 7613 CGCGCTGC---AGCATCATCCACATGGCCTCCACATAGTCGCTG-GCATGACCCCAGTCA 7558 Query 159055 CGCTTGGCATCCATGTTCCCGAGCTC 159080 || || | |||| || || ||||| Sbjct 7557 CGTTTCGAGTCCAGATTACCCAGCTC 7532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547159479427400