Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq134 161 1e-34 seq4921 159 4e-34 seq5580 158 1e-33 seq6717 132 5e-26 >seq134 Length=44313 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || || | ||||| ||| || Sbjct 29307 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 29248 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| || || |||||||||||||| ||||| ||||| ||| Sbjct 29247 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 29188 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||| || ||||||| ||||| | | ||||| || Sbjct 29187 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAAC 29128 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||||| || | ||||| || ||||| Sbjct 29127 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGG 29081 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || || | ||||| ||| || Sbjct 29684 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 29625 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| || || |||||||||||||| ||||| ||||| ||| Sbjct 29624 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 29565 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||| || ||||||| ||||| | | ||||| || Sbjct 29564 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAAC 29505 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||||| || | ||||| || ||||| Sbjct 29504 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGG 29458 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || || | ||||| ||| || Sbjct 29079 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 29020 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||||| || || |||||||||||||| ||||| ||||| ||| Sbjct 29019 GATACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 28960 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||| || ||||||| |||||| | | ||||| || Sbjct 28959 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACCTTGTCCGACTACAAC 28900 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||| | || | || ||||||| || || || Sbjct 28899 ATCCAGAAGGAGTCCACTTTGCACTTGGTTCTGCGTCTGCGTGGCGG 28853 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || || | ||||| ||| || Sbjct 29912 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 29853 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| || || |||||||||||||| ||||| ||||| ||| Sbjct 29852 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 29793 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| ||||| | ||||||| || ||| | | ||||| || Sbjct 29792 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAAC 29733 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||| | || | || | ||||| || ||||| Sbjct 29732 ATCCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGG 29686 >seq4921 Length=55175 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || || ||||||||||| || || | ||||| ||| | Sbjct 52097 AATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTC 52156 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||||||||| || ||||| || || ||||| ||||| || Sbjct 52157 TGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 52216 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || ||||| || ||||| || ||||||| || ||||| | ||||| || Sbjct 52217 GCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTACAA 52276 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||| | || | || ||||||| || ||||| Sbjct 52277 CATCCAGAAGGAGTCGACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 52324 >seq5580 Length=51276 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || || || || ||||| || ||||||||||| || | Sbjct 19336 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 19395 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | || || || || |||||||| || |||||||||||||| ||| Sbjct 19396 GATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 19455 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| ||||| ||||| || || |||| ||| ||||| | ||||| ||| Sbjct 19456 CAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTTTCTGACTACAAT 19515 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || |||||| | ||| | || | || || || ||||| Sbjct 19516 ATCCAGAAAGAGTCCACTTTGCATTTGGTGCTCCGCCTGCGTGGTGG 19562 >seq6717 Length=26621 Score = 132 bits (146), Expect = 5e-26 Identities = 286/426 (67%), Gaps = 4/426 (1%) Strand=Plus/Plus Query 31979 TGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACC 32038 ||| ||| ||||| ||||| ||||||||||| || | | ||| ||||| ||| Sbjct 568 TGGTGGATGGCCTTAAGCCCGGTCAGCGCAAGGTCATGTTTACGTGCTTCAAGCGTAACG 627 Query 32039 TGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATC 32098 | |||| | || ||||| || ||||||| | ||||| || | ||||||| Sbjct 628 ATAAGCGTGAGGTAAAAGTGGCCCAATTGTCGGGTTCGGTGGCTGAAATGTCAGCCTATC 687 Query 32099 ACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTG 32158 | ||||||||| ||| || ||| |||||||| || | || ||||| ||||| || Sbjct 688 ATCACGGCGAGATGTCCCTGCAGATGACCATTGTGAATTTGGCACAGAATTTTGTGGGCT 747 Query 32159 CAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCA 32218 |||| || | || || | ||||| || ||||| || || || ||| | ||||||| Sbjct 748 CAAACAATATCAATTTGTTGGAGCCGCGCGGTCAGTTCGGTACACGTCTCACTGGTGGCA 807 Query 32219 AGGATGCTGCGAGCTCCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGAT 32276 ||||| |||||||| | ||||| || ||||| | |||| || || || || Sbjct 808 AGGATTCTGCGAGCGCTCGTTATATTTTCACATTGATGTCGCCGCT--AACACGTCTCAT 865 Query 32277 TTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGA 32336 | | |||| ||| ||| | |||| |||| | | ||||| |||||||| | || Sbjct 866 CTATCATCCGTTGGATGATCCCCTGCTGCAGTATCAGGTGGATGATGGTCAGCGCATTGA 925 Query 32337 GCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGG 32396 ||| | | || | ||| | | || ||| | ||||||| || || || |||||||| Sbjct 926 GCCAATTTGGTATATTCCCATTATACCCATGGTACTGGTGAATGGCGCCGAGGGCATCGG 985 Query 32397 AACGGG 32402 || || Sbjct 986 CACTGG 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570251494064560