Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4921 100 2e-16 seq134 86.0 4e-12 >seq4921 Length=55175 Score = 100 bits (110), Expect = 2e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| || | ||| |||||| || ||||| || || ||||| || || Sbjct 52315 AGACGCAGCACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGG 52256 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || |||||||| || || || || | || || Sbjct 52255 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCT 52196 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | || || | || ||||| | ||| || |||| ||| Sbjct 52195 TTGTCTTGGAT-TTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGT 52137 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || ||||| | ||||||||||| || ||||| || Sbjct 52136 GATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATTTT 52095 >seq134 Length=44313 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| ||||| || | |||| |||||| || ||||| || || || Sbjct 28853 CCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 28912 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || || || || ||||| || || |||||||| || || || || Sbjct 28913 AAGGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 28972 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | ||||| | || || || |||||| Sbjct 28973 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTAACATTCTCGATGGTATCGGATGGCTCCAC 29031 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || || || || || || ||||||||| Sbjct 29032 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 29080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314697905057279