Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6467 127 2e-24 >seq6467 Length=13775 Score = 127 bits (140), Expect = 2e-24 Identities = 422/646 (65%), Gaps = 18/646 (3%) Strand=Plus/Plus Query 6492 TAATTTTGAGCTGGGGGAACGG-TCGGGGCTCTCGTTGCAGCTG--GATCCGGAGCCGCT 6548 |||| ||||||| ||| || || | |||||| |||| | ||| | ||| ||| | | Sbjct 8765 TAATGTTGAGCTTGGGAAAGGGCTTGGGGCTA-CGTTTTATCTGCTGCTCC--AGCGGTT 8821 Query 6549 CGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA 6608 | || ||||| || || | || ||||| || | || || | | || || || || Sbjct 8822 CTATATGGTTGAGATAAACGTGAGCATCGCCTATGGTGTGGATGAATTCGCCGGGCTTCA 8881 Query 6609 ACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCA 6668 ||| ||||| || || | || |||||||||||||| ||||||||||| || | Sbjct 8882 GACCCGTCACATGGGCTATTAAATAGGTGAGCAGAGCGTAGGAGGCAATGTTGAAGGGAA 8941 Query 6669 CCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT----- 6723 | || | |||||||| | || ||||| ||||||||||||| || || || Sbjct 8942 CGCCGAGGCCCATGTCAGCACTGCGCTGATATAGCTGGCAGGACAATTCGCCCTTGGACT 9001 Query 6724 -CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCT 6782 || ||| |||| || ||| |||||||| || |||||||| || | |||| Sbjct 9002 GCGAGACAAAGAACTGAACTAGGCAATGGCACGGCGGTAGCGCCATTTTGGGTATATCCA 9061 Query 6783 TCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAA-GGTGTCG 6841 |||| ||||| ||| |||| | || | | || |||| | | | || || | Sbjct 9062 TCGGATTCCAGGCGGACATGATAATGCGACGATC-CGAGGGATTAGTTCGAATCGTATGT 9120 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATAC 6901 ||||| | || | ||||| ||||| || | || || | |||| |||||| Sbjct 9121 ATCACTTGTTGTAATTGGTCAATACCCTGGCCGGTGTAATCGTCATCGCAAGTGCGATAC 9180 Query 6902 TCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCG- 6960 || || |||||||| | ||||||||| || || || || |||| || || | |||| Sbjct 9181 TCGGCGCCAAAGTGACGCCACTGGAATCCATAAACTGGACCCAGATCCCCGACAGCCCGT 9240 Query 6961 -AGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCA 7019 | || | || | || |||||||||| || || | | || ||| ||||| || | | Sbjct 9241 TCGGTGTG-GCCGCAGC-TGTCCAGAAACTCGCGCGTGCTGTTAGCATCCCATATGTGGA 9298 Query 7020 CCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCT 7079 | | | | | ||||| | || || | |||||||||||| |||| Sbjct 9299 CTTTCTTTGCCTGCAATATCTTGGCATCGGTCTTGCCGGCAATGAACCACAGCAGTTCCT 9358 Query 7080 CGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 || ||||||| || | ||||| ||||| |||||||||||||| Sbjct 9359 CGGCCACGCCTCGAAAGAATACACGCTTCGTGGTCAGCAGCGGAAA 9404 Score = 127 bits (140), Expect = 2e-24 Identities = 422/646 (65%), Gaps = 18/646 (3%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 |||||||||||||| ||||| ||||| | || ||||||| |||||| ||||||||| Sbjct 9404 TTTCCGCTGCTGACCACGAAGCGTGTATTCTTTCGAGGCGTGGCCGAGGAACTGCTGTGG 9345 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | || || | ||||| | | | | || | || ||||| Sbjct 9344 TTCATTGCCGGCAAGACCGATGCCAAGATATTGCAGGCAAAGAAAGTCCACATATGGGAT 9285 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCT--CGGGAGGAGGGCG 34397 ||| || | | || || |||||||||| || | || | || | |||| | || | Sbjct 9284 GCTAACAGCACGCGCGAGTTTCTGGACA-GCTGCGGC-CACACCGAACGGGCTGTCGGGG 9227 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457 | |||| || || || || ||||||||| | |||||||| || |||||||| ||| Sbjct 9226 ATCTGGGTCCAGTTTATGGATTCCAGTGGCGTCACTTTGGCGCCGAGTATCGCACTTGCG 9167 Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACC-TTGAAG 34516 | | || || | || ||||| ||||| | || | ||||| | || || | Sbjct 9166 ATGACGATTACACCGGCCAGGGTATTGACCAATTACAACAAGTGATACATACGATTCGAA 9107 Query 34517 CGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTG 34576 | | |||| || | | || | |||| ||| ||||| |||| |||| | || Sbjct 9106 CTAATCCCTCG-GATCGTCGCATTATCATGTCCGCCTGGAATCCGATGGATATACCCAAA 9048 Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCG------AATGGGGAG 34630 |||||||| || |||||||| ||| || |||| ||| || || || || Sbjct 9047 ATGGCGCTACCGCCGTGCCATTGCCTAGTTCAGTTCTTTGTCTCGCAGTCCAAGGGCGAA 8988 Query 34631 CTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATT 34690 ||||||||||||| ||||| || | |||||||| | || || || ||||||||| Sbjct 8987 TTGTCCTGCCAGCTATATCAGCGCAGTGCTGACATGGGCCTCGGCGTTCCCTTCAACATT 8928 Query 34691 GCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAG 34750 || |||||||||||||| || | || || ||||| ||| || || || || Sbjct 8927 GCCTCCTACGCTCTGCTCACCTATTTAATAGCCCATGTGACGGGTCTGAAGCCCGGCGAA 8868 Query 34751 CTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATC 34810 | | || || | || ||||| || | || || ||||| || || | ||| ||| | Sbjct 8867 TTCATCCACACCATAGGCGATGCTCACGTTTATCTCAACCATATAGAACCGCT--GGAGC 8810 Query 34811 --CAGCTGCAACGAGAGCCCCGA-CCGTTCCCCCAGCTCAAAATTA 34853 ||| | |||| |||||| | || || ||| ||||||| |||| Sbjct 8809 AGCAGATAAAACG-TAGCCCCAAGCCCTTTCCCAAGCTCAACATTA 8765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448216100097360