Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4921 107 1e-18 seq134 102 6e-17 seq5580 98.7 7e-16 >seq4921 Length=55175 Score = 107 bits (118), Expect = 1e-18 Identities = 175/249 (70%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 27770 TGCATCAACACAATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTA 27829 |||| |||| | | | ||||||||||| ||||||||||| || || || || || | Sbjct 52080 TGCAGCAACGC--TTGGAAAATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCA 52137 Query 27830 CAATTGATGTCGAAAGCACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAA 27887 | | || ||||| | | ||| || | ||| ||||| ||||| ||||| Sbjct 52138 CCTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT--GTCAAGGCTAAAATCCAAGACAA 52195 Query 27888 AGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGA 27947 ||||||| |||| || ||||| || || || |||||||| || || |||| || | Sbjct 52196 AGAAGGTATTCCACCAGATCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGATGG 52255 Query 27948 ACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 |||| | | || || ||||||||||| || ||| |||||||| ||||| ||||| | Sbjct 52256 CCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACTTTGCACTTGGTGCTGCGTCT 52315 Query 28008 GCGTGGCGG 28016 |||||| || Sbjct 52316 GCGTGGTGG 52324 >seq134 Length=44313 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 28986 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 28927 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | ||||||||| ||||||||||| || ||| ||||||||| |||||| || Sbjct 28926 GATGGACGTACCTTGTCCGACTACAACATCCAGAAGGAGTCCACTTTGCACTTGGTTCTG 28867 Query 28003 CGTTTGCGTGGCGG 28016 ||| |||||||||| Sbjct 28866 CGTCTGCGTGGCGG 28853 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| || || || || || || || || ||||| Sbjct 29819 GACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAG 29760 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| ||||||||| ||||||||||| || ||| ||||||||| ||||| | Sbjct 29759 GATGGACGCACCTTGTCCGACTACAACATCCAGAAGGAGTCCACTTTGCACTTGGTGCTC 29700 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 29699 CGTCTGCGTGGTGGC 29685 >seq5580 Length=51276 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/234 (70%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || || || || || || |||| |||||| || Sbjct 19336 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAA----CC 19391 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || ||| |||| || ||| || || ||||||||||| |||| | Sbjct 19392 GTCGGA-TACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAG 19450 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || ||||| || || || || |||| || | |||| | | || || | Sbjct 19451 ATCAGCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTTTCTGACT 19510 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 |||| ||||| |||||| ||||||||||||||| | || ||||||| |||| Sbjct 19511 ACAATATCCAGAAAGAGTCCACTTTGCATTTGGTGCTCCGCCTGCGTGGTGGCG 19564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355826562765801