Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5580 178 3e-39 seq4921 149 1e-30 seq134 134 3e-26 >seq5580 Length=51276 Score = 178 bits (196), Expect = 3e-39 Identities = 158/198 (80%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 |||||||||||| ||||| || || || | |||||| | |||||||||||||||||||| Sbjct 19533 AGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCCAGCTGCTTGCC 19474 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||||| || | || || || || ||||||| |||||| |||||||||||||| ||| Sbjct 19473 AGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTT 19414 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || || |||||||| || || ||| ||||| |||||||| ||||| |||||||| || Sbjct 19413 AACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGT 19354 Query 211097 CTTTACAAACACCTGCAT 211114 |||||||| | ||||| Sbjct 19353 TTTTACAAAAATTTGCAT 19336 >seq4921 Length=55175 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| | ||| ||||| || |||||||| || |||| |||||| | ||||| Sbjct 52309 AGCACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCC 52250 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | || || || || || |||| ||||| ||||| Sbjct 52249 TCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTGTCT 52190 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || ||||||||||||||| || ||||| | ||||| ||| Sbjct 52189 TGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 52130 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || ||||| | |||||||| Sbjct 52129 TTGCCGGTGAGGGTTTTCACAAAGATTTGCATTTT 52095 >seq134 Length=44313 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| | ||||||||| || |||||||| || || | | ||| | |||||| Sbjct 28868 AGAACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCC 28927 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | || || || || || |||| || ||||||||| Sbjct 28928 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 28987 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||| || || || ||||| | ||||| ||| Sbjct 28988 TGGATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTC 29047 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 29048 TTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 29079 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| | ||||||||| || |||||||| || || | | ||| | |||||| Sbjct 29701 AGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCC 29760 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| |||||||| | || || || || || |||| || ||||||||| Sbjct 29761 TCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 29820 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||| || || || ||||| | ||||| ||| Sbjct 29821 TGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTC 29880 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | ||||| || || | |||||| || Sbjct 29881 TTGCCAGTCAAGGTCTTGACGAAGATCTGCATATT 29915 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || ||||| || |||||||| || || | | || | |||||| Sbjct 29096 AGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCC 29155 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | || || || || || |||| || ||||||||| Sbjct 29156 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 29215 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||| || || || ||||| | ||||| ||| Sbjct 29216 TGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTC 29275 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 29276 TTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 29307 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || ||||| || |||||||| || || | | || | |||||| Sbjct 29473 AGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCC 29532 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | || || || || || |||| || ||||||||| Sbjct 29533 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 29592 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||| || || || ||||| | ||||| ||| Sbjct 29593 TGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTC 29652 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 29653 TTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 29684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159029280939995