Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5580 129 4e-25 seq4921 118 7e-22 >seq5580 Length=51276 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || |||||||||||||| || || |||||||| || || || | || Sbjct 19336 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 19395 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| ||||| | || | | ||||||||||| | || |||||||| Sbjct 19396 GATACCATCGAGAATGTTAAAGCCAAGA-TCCAGGACAAAGAAGGAATTCCTCCAGATCA 19454 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || ||||| || |||||||| | ||||| | || ||||| Sbjct 19455 GCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTTTCTGACTACAA 19514 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||||||||| || ||||| || Sbjct 19515 TATCCAGAAAGAGTCCACTTTGCATTTGGT 19544 >seq4921 Length=55175 Score = 118 bits (130), Expect = 7e-22 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||||||||| || || || ||||| | || || || || Sbjct 52095 AAAATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 52154 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | |||| | |||||||||||| | || ||||| Sbjct 52155 TCTGACACCATCGAGAATGTCAAGGCTAAAA-TCCAAGACAAAGAAGGTATTCCACCAGA 52213 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGAT 23784 ||| |||||||| || ||||||||||| || ||||| || | |||| |||| | || Sbjct 52214 TCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCG--GAC 52271 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||||| || || ||||| || || || || || Sbjct 52272 TACAACATCCAGAAGGAGTCGACTTTGCACTTGGT 52306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337975560637604