Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq134 100 7e-16 seq4921 93.3 1e-13 >seq134 Length=44313 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || |||||||| || ||||| || ||||||||||| |||| ||||| | ||||| Sbjct 29095 GAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATC 29154 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| | | |||||| || | | || || ||||| || Sbjct 29155 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 29214 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || ||| |||| | | | || || ||| || || | || || || Sbjct 29215 CTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGT 29274 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||||| |||||| Sbjct 29275 CTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 29307 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || |||||||| || ||||| || ||||||||||| |||| ||||| | ||||| Sbjct 29472 GAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATC 29531 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| | | |||||| || | | || || ||||| || Sbjct 29532 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTC 29591 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || ||| |||| | | | || || ||| || || | || || || Sbjct 29592 CTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGT 29651 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||||| |||||| Sbjct 29652 CTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 29684 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| ||||| || ||||||||||| |||| || || | ||||| || | Sbjct 28873 CAAG-TGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCCTCCA 28931 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| | | |||||| || | | || || ||||| || || | Sbjct 28932 GCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 28991 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | | || || ||| || || | || || || |||| Sbjct 28992 TCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGC 29051 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||||| |||||| Sbjct 29052 CAGTCAAGGTCTTGACGAAGATCTGCAT 29079 >seq4921 Length=55175 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| ||||| || ||||||||||| || | | || | ||||| || | Sbjct 52304 CAAG-TGCAAAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCCA 52246 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| | | |||||| || | | || ||||| || ||||| | Sbjct 52245 GCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGA 52186 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| |||||| |||| | | |||| || ||| || || | || || || |||| Sbjct 52185 TTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGC 52126 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||| || ||||| |||| |||||||| Sbjct 52125 CGGTGAGGGTTTTCACAAAGATTTGCATTTT 52095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153698645352473