Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4921 140 2e-28 seq134 140 2e-28 seq5580 116 3e-21 >seq4921 Length=55175 Score = 140 bits (154), Expect = 2e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || ||||| ||| | || |||||| ||||||||||| || Sbjct 52327 ATACCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCC 52268 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | || ||| | || ||||||||||| |||||||||||||||||||||||||||| Sbjct 52267 GAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGT 52208 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | |||||| || || || || ||| | | | |||||||| | || || Sbjct 52207 GGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCG 52148 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || || ||||| || |||||||| ||||| ||||||||||| Sbjct 52147 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 52098 >seq134 Length=44313 Score = 140 bits (154), Expect = 2e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| ||||| || |||||| ||||||||||| |||| | || | || ||| Sbjct 29476 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCC 29535 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| |||||||||||||||||||||| || | ||| ||||| ||| Sbjct 29536 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 29595 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | || ||| | ||||| |||| | |||||||||| || || ||||| Sbjct 29596 ATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 29654 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | |||||| |||||||| |||||| Sbjct 29655 GCCAGTCAAGGTCTTGACGAAGATCTGCATG 29685 Score = 136 bits (150), Expect = 3e-27 Identities = 173/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| | ||| |||||| ||||||||||| || Sbjct 29682 CATGCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTC 29741 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || | || | ||| | || |||| |||||| || || |||||||||||||||||||||| Sbjct 29742 GGACAAGGT-GCGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTG 29800 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | ||| ||||| ||| ||||| || | || ||| | ||||| |||| | Sbjct 29801 GGGGAATACCCTCCTTGTCCTGGATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGC 29859 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||| || || ||||| || || | |||||| |||||||| ||||| Sbjct 29860 TCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 29912 Score = 134 bits (148), Expect = 1e-26 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-C 44169 || || | ||| | || |||| ||| | ||| |||||| ||||||||||| |||| | Sbjct 28853 CCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 28912 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | || | || ||||||||||| ||||| |||||||||||||||||||||| || Sbjct 28913 AAGGT-ACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 28971 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| || | || ||| | ||||| |||| | |||| Sbjct 28972 AATGCCCTCCTTGTCCTGGATCTT-GGCCTTAACATTCTCGATGGTATCGGATGGCTCCA 29030 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| || || ||||| || || | |||||| |||||||| |||||| Sbjct 29031 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 29080 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| ||||| || |||||| ||||||||||| |||| | || | || ||| Sbjct 29099 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCC 29158 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| |||||||||||||||||||||| || | || ||||| ||| Sbjct 29159 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 29218 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | || ||| | ||||| |||| | |||||||||| || || ||||| Sbjct 29219 ATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 29277 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | |||||| |||||||| |||||| Sbjct 29278 GCCAGTCAAGGTCTTGACGAAGATCTGCATG 29308 >seq5580 Length=51276 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| || | ||| ||| || ||||| ||||| || | || ||| | || || Sbjct 19545 CACCAAATGCAAAGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTC 19486 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || || || ||||||||||||||||||| ||| | ||||| || ||| Sbjct 19485 CAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 19426 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| || ||| | ||||| || | | ||| ||||| | || || |||| Sbjct 19425 GATCTT-GGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCT 19367 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||||||| || || || |||||||| Sbjct 19366 TACCCGTGAGGGTTTTTACAAAAATTTGCAT 19336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359954147054271