Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_000924.1 Length=61670 Score E Sequences producing significant alignments: (Bits) Value seq1080 127 8e-25 seq6246 107 8e-19 >seq1080 Length=1007 Score = 127 bits (140), Expect = 8e-25 Identities = 78/82 (95%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 5961 CCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGTGTCACC 6020 |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 924 CCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACC 983 Query 6021 CA-CATGCTGTACTGCACCTGG 6041 || ||||||||||||||||||| Sbjct 984 CATCATGCTGTACTGCACCTGG 1005 >seq6246 Length=1444 Score = 107 bits (118), Expect = 8e-19 Identities = 61/62 (98%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 5864 AGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCAT 5923 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 62 AGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCAT 3 Query 5924 GT 5925 || Sbjct 2 GT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197190199622016