Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq13747 156 4e-33 >seq13747 Length=19884421 Score = 156 bits (172), Expect = 4e-33 Identities = 539/827 (65%), Gaps = 28/827 (3%) Strand=Plus/Plus Query 15898 AGCAACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTC 15957 ||| || ||||| | ||||| || | || ||||| |||||||| || || || || Sbjct 8706132 AGCCACGCCCATACGCTGGTACTCTCCCACCTTCTTTTCAAAGAAGTTGGTCTTCCCGTC 8706191 Query 15958 TAAAGATATATTTTCCATAAAATC-AAAGGGATTA-GTAGCTGAAAATATCTTAGAGTAC 16015 | || || | ||||| |||| |||||| || | | || | || || | ||| Sbjct 8706192 CAGCGAGATCATCTCCATGAAATTGAAAGGGTTTTTGGTGTTGTAGAT---TTTGCCTAC 8706248 Query 16016 -CCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCA 16074 ||||| || | || | || || |||||||| || ||||| |||| |||||||| Sbjct 8706249 GCCCAGCTCTACCAGTAGCCGGTCCGCCACAAATTCGATGTATTGCGACATCAAGTCGCA 8706308 Query 16075 ATTAATTCCTAT--AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACA 16132 || || || || || || || || | || | || | || | || || || | Sbjct 8706309 GTTCATGCCGATCAAATTC--ACGGGCAAGGCGTCGGTGAGGAACTCCTGCTCAATGTCC 8706366 Query 16133 ACCGCTTCTTTAATGATATCGGTG----GCTCGTGTTTCAGACGGTGTATGGTTTAGGTG 16188 || || || || || ||| || ||||| | | ||| | ||| ||||| Sbjct 8706367 ACAGCATCGCGGATAATCTCGATGATGCGCTCGCG----ACGTGGTTTCTGGACGAGGTG 8706422 Query 16189 TTTAAACATTAGACAC-GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGT 16247 | ||||| || ||| ||||||||||| || || |||||||| ||| |||||| |||| Sbjct 8706423 CTGGAACATAAG-CACAGCGAAGTCGCAGTGCAGACCTTCGTCCCTGGAGATAAGCTCGT 8706481 Query 16248 TGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA-- 16305 |||| || || | || ||||| ||||| ||||| |||||||| || | ||||| Sbjct 8706482 TGGAGAAGGTCAGACCGGGCATCAAACCTCGCTTCTTCAACCAGAAGATAGAGGCAAAGC 8706541 Query 16306 TGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT 16365 || | | | |||||||||||||| || | ||||| ||||| | || ||| | | | Sbjct 8706542 TGCCGCTG--AAGAATATACCCTCCACGGCAGCAAATGCGATGATGCGCTCCCCAAAGTT 8706599 Query 16366 AGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCAT 16425 || || | |||||| | | |||| || || || | || | | ||| Sbjct 8706600 GGCTGACTTCGAAGAAATCCAGGCCAGAGCCCAATCTGCCTTGCGCTTCACCGCAGGCAT 8706659 Query 16426 CGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCA 16483 ||| || ||||| || |||| ||| | | | || |||| || || ||||| Sbjct 8706660 CGTCTCAATGGCATTGAACAGGTATTCACGCTGGTGGGGATCTCGA--ATGTAAGTATCG 8706717 Query 16484 ATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAG 16543 || || | ||||||||| || ||||| | ||| || ||||| || || || || ||||| Sbjct 8706718 ATGAGCACACTGTACATCTCAGAGTGCACGTTTTCCATGGCGATTTGGAAACCGTAGAAA 8706777 Query 16544 CATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACG 16603 || || ||||||| | || || ||| || || ||| |||||||||| ||||| Sbjct 8706778 CAGCGCGCCTCCGTGACCTGAACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTCACA 8706837 Query 16604 ATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGAT 16663 || || || |||||||| || |||| | ||| ||||| | |||||| Sbjct 8706838 ATTCCATCCGAAGCAGCAAAGAAGGCCAGCACGTGGGAGATGAAGTGGCGTTCGTCGTCC 8706897 Query 16664 GTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTC 16710 |||| ||||||||| | | ||| || || | ||||| || || Sbjct 8706898 TTAAGGCGATGCCAATCGGTGAGATCCTTCGAGAGGTCCACCTCCTC 8706944 Score = 114 bits (126), Expect = 1e-20 Identities = 163/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| |||||||| ||||| | | || |||||||| | |||| |||| |||| Sbjct 16052313 TTCATGTAGCGTATCTTCCCAAAGATAGATCGTTCCTTCCAGCCCATGTCATGGACTCCT 16052254 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055 | | | ||| | ||| ||||||||||| ||||| ||| |||||| | ||||||| Sbjct 16052253 CCGATAGACCACATACACCCCACGTATCCATTGGGGTCTCGTCCGTCCAGGCTGTACTTA 16052194 Query 119056 TCGTTTAAGTAGA--TACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113 || ||||||||| | || | || || || ||||||| ||||||| || | Sbjct 16052193 TC-ATTAAGTAGAATGGCGTACTC-TAGGGCCTGCTCGGGAGTCTCTGTCCATTCGAGGA 16052136 Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTC 119159 | || |||||||||||||| || | | |||||||| || ||||| Sbjct 16052135 TCTTCTTAGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGCCCTC 16052090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511326507042680