Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq13744 104 5e-17 >seq13744 Length=5790199 Score = 104 bits (114), Expect = 5e-17 Identities = 196/283 (69%), Gaps = 9/283 (3%) Strand=Plus/Plus Query 254106 CTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACT 254165 || || |||||||| || || || || || | | || || ||| ||| ||||||||| Sbjct 563277 CTGGAACTGAACGCCTCGGATGAGCGAGGCATCAATGTGGTGCGCACCAAAATCAAGACT 563336 Query 254166 TTCTCCAAGAT-GTCGATTTC---GT-CGTTCCAAC--CCGGC--TGTCCGCCTTTCAAG 254216 |||||| || | | || | || || || || | ||| ||||| || |||||| Sbjct 563337 TTCTCCCAGCTTGCCGCCAGCAGTGTGCGCCCCGACGGCAGGCCGTGTCCACCGTTCAAG 563396 Query 254217 CTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGA 254276 |||| |||||||||||||| ||| ||||||| | ||| ||||| || || || || Sbjct 563397 ATCGTCATCCTGGACGAGGCCGACTCCATGACACATGCCGCCCAGTCGGCGCTGCGTCGC 563456 Query 254277 ACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAG 254336 || ||||||| | | | || || || |||||| | |||||||| || || | Sbjct 563457 ACCATGGAGAAGGAGAGCCAAAGCACTCGGTTCTGCCTGATTTGCAACTATGTCTCCCGG 563516 Query 254337 ATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||||||| ||| | | || ||||| ||||||| || |||| Sbjct 563517 ATCATCGTGCCGATCACGTCGCGGTGTTCCAAGTTCCGGTTCA 563559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073577246317632