Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq13746 141 2e-28 seq13747 132 1e-25 >seq13746 Length=16180835 Score = 141 bits (156), Expect = 2e-28 Identities = 278/402 (69%), Gaps = 18/402 (4%) Strand=Plus/Minus Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACC 35455 ||||| ||||| || || ||||| ||||||||||| || ||||| || |||||| |||| Sbjct 796033 GGAGACTTGGGCCCGGTGTACGGTTTCCAATGGCGGCACTTTGGCGCCGAATATACTACC 795974 Query 35456 TGTTCTTCCGATTA-TAC--TGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512 ||| |||| | ||| |||||||||||| |||||| | || | | | || Sbjct 795973 TGTGA---CGATGACTACCGTGGAAAGGGTATCGATCAACTAAAGCATGTCATTGACACG 795917 Query 35513 CTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCT 35571 | | |||| ||||| |||||| |||| || ||| |||| ||||||||| |||| | Sbjct 795916 AT-AAAGAAGAATCCTTCGGATAGACGGATCATCATGTCGGCGTGGAATCCTCTGGACAT 795858 Query 35572 TCACCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAA----- 35625 || ||||| | ||||| |||||| || | ||||| |||||||| || | Sbjct 795857 TCCAAAAATGGCATTGCCTCCGTGCCAC-TGCTTGGCTCAGTTTTATGTCTCTCAGGAGC 795799 Query 35626 -TGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCT 35684 || ||| | || |||||| ||||||| ||||||| || | || |||| || |||| Sbjct 795798 GCGGCGAACTCTCCTGCCAGCTGTATCAACGAAGCGCCGACATGGGCCTGGGTGTACCCT 795739 Query 35685 TCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAAC 35744 |||| ||||| || || | | |||| || |||| ||| | | |||||||| | Sbjct 795738 TCAACATTGCCTCCTATGCCTTGTTGACCTATATGATCGCCCATGTCACTGGTCTAAAGC 795679 Query 35745 CGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATA 35786 | || || || | | |||| | || || ||| ||| |||| Sbjct 795678 CTGGTGACTTCGTACACACTATGGGAGA--CACGCATGTATA 795639 Score = 89.7 bits (98), Expect = 1e-12 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 94166 TCACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCAC 94225 |||||||| |||||| ||||| || ||||||||||| |||||| | || || | | Sbjct 14159132 TCACAAACATGTTGAGAGCGATGGAGGCCAAATTGCAAACTGCAATCTCGTCAGGTGAAG 14159191 Query 94226 TGTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGT 94285 |||| |||||||| ||||||| ||| |||| ||| |||| ||||| | ||||| Sbjct 14159192 AATACTCAACAATTTCCGTGCACAGATTGCTGCACTTAATGGTGCCCACATTCTGTTGGT 14159251 Query 94286 TAGACTTTCTATTGATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTC 94337 | ||||| ||| || ||||| || || ||||| ||||||| || Sbjct 14159252 TGCTCTTTCGGTTGCAGGCGTCCTTGAACAGCATGTAAGGATTTCCAGTCTC 14159303 >seq13747 Length=19884421 Score = 132 bits (146), Expect = 1e-25 Identities = 296/440 (67%), Gaps = 7/440 (2%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 || |||||||| || || || || ||||| || || || || || || |||||| | Sbjct 8706578 GCATTTGCTGCCGTGGAGGGTATATTCTTCAGCGGCAGCTTTGCCTCTATCTTCTGGTTG 8706519 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | ||| | |||| ||||| |||| |||||| ||| | || || ||||||||| Sbjct 8706518 AAGAAGCGAGGTTTGATGCCCGGTCTGACCTTCTCCAACGAGCTTATCTCCAGGGACGAA 8706459 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT--TGATACCCCAT 102098 ||||| || ||||||| || || |||| || || | || || ||| | | Sbjct 8706458 GGTCTGCACTGCGACTTCGC-TG--TGCTTATGTTCCAGCACCTCGTCCAGAAACCACGT 8706402 Query 102099 CAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCA 102158 | | || | || | || ||| || || || || ||||| || || || |||| Sbjct 8706401 C--GCGAGCGCATCATCGAGATTATCCGCGATGCTGTGGACATTGAGCAGGAGTTCCTCA 8706344 Query 102159 CAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTG 102218 | | || |||| || || || | || ||||||||| | |||||| || ||||| | Sbjct 8706343 CCGACGCCTTGCCCGTGAATTTGATCGGCATGAACTGCGACTTGATGTCGCAATACATCG 8706284 Query 102219 AATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCA 102278 |||||||||| || ||| |||| || |||| ||| || ||| || | | Sbjct 8706283 AATTTGTGGCGGACCGGCTACTGGTAGAGCTGGGCGTAGGCAAAATCTACAACACCAAAA 8706224 Query 102279 ACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGA 102338 |||| ||| |||||||| | || || || || ||||||||||| |||||||||| Sbjct 8706223 ACCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGGAAGACCAACTTCTTTGAAAAGA 8706164 Query 102339 GAGTCGCCGAGTATCAACGT 102358 || | ||||| || ||| Sbjct 8706163 AGGTGGGAGAGTACCAGCGT 8706144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989409675810295