Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30]
13,749 sequences; 230,993,012 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq13746 141 2e-28
seq13747 132 1e-25
>seq13746
Length=16180835
Score = 141 bits (156), Expect = 2e-28
Identities = 278/402 (69%), Gaps = 18/402 (4%)
Strand=Plus/Minus
Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACC 35455
||||| ||||| || || ||||| ||||||||||| || ||||| || |||||| ||||
Sbjct 796033 GGAGACTTGGGCCCGGTGTACGGTTTCCAATGGCGGCACTTTGGCGCCGAATATACTACC 795974
Query 35456 TGTTCTTCCGATTA-TAC--TGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512
||| |||| | ||| |||||||||||| |||||| | || | | | ||
Sbjct 795973 TGTGA---CGATGACTACCGTGGAAAGGGTATCGATCAACTAAAGCATGTCATTGACACG 795917
Query 35513 CTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCT 35571
| | |||| ||||| |||||| |||| || ||| |||| ||||||||| |||| |
Sbjct 795916 AT-AAAGAAGAATCCTTCGGATAGACGGATCATCATGTCGGCGTGGAATCCTCTGGACAT 795858
Query 35572 TCACCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAA----- 35625
|| ||||| | ||||| |||||| || | ||||| |||||||| || |
Sbjct 795857 TCCAAAAATGGCATTGCCTCCGTGCCAC-TGCTTGGCTCAGTTTTATGTCTCTCAGGAGC 795799
Query 35626 -TGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCT 35684
|| ||| | || |||||| ||||||| ||||||| || | || |||| || ||||
Sbjct 795798 GCGGCGAACTCTCCTGCCAGCTGTATCAACGAAGCGCCGACATGGGCCTGGGTGTACCCT 795739
Query 35685 TCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAAC 35744
|||| ||||| || || | | |||| || |||| ||| | | |||||||| |
Sbjct 795738 TCAACATTGCCTCCTATGCCTTGTTGACCTATATGATCGCCCATGTCACTGGTCTAAAGC 795679
Query 35745 CGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATA 35786
| || || || | | |||| | || || ||| ||| ||||
Sbjct 795678 CTGGTGACTTCGTACACACTATGGGAGA--CACGCATGTATA 795639
Score = 89.7 bits (98), Expect = 1e-12
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 94166 TCACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCAC 94225
|||||||| |||||| ||||| || ||||||||||| |||||| | || || | |
Sbjct 14159132 TCACAAACATGTTGAGAGCGATGGAGGCCAAATTGCAAACTGCAATCTCGTCAGGTGAAG 14159191
Query 94226 TGTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGT 94285
|||| |||||||| ||||||| ||| |||| ||| |||| ||||| | |||||
Sbjct 14159192 AATACTCAACAATTTCCGTGCACAGATTGCTGCACTTAATGGTGCCCACATTCTGTTGGT 14159251
Query 94286 TAGACTTTCTATTGATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTC 94337
| ||||| ||| || ||||| || || ||||| ||||||| ||
Sbjct 14159252 TGCTCTTTCGGTTGCAGGCGTCCTTGAACAGCATGTAAGGATTTCCAGTCTC 14159303
>seq13747
Length=19884421
Score = 132 bits (146), Expect = 1e-25
Identities = 296/440 (67%), Gaps = 7/440 (2%)
Strand=Plus/Minus
Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980
|| |||||||| || || || || ||||| || || || || || || |||||| |
Sbjct 8706578 GCATTTGCTGCCGTGGAGGGTATATTCTTCAGCGGCAGCTTTGCCTCTATCTTCTGGTTG 8706519
Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040
||||| | ||| | |||| ||||| |||| |||||| ||| | || || |||||||||
Sbjct 8706518 AAGAAGCGAGGTTTGATGCCCGGTCTGACCTTCTCCAACGAGCTTATCTCCAGGGACGAA 8706459
Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT--TGATACCCCAT 102098
||||| || ||||||| || || |||| || || | || || ||| | |
Sbjct 8706458 GGTCTGCACTGCGACTTCGC-TG--TGCTTATGTTCCAGCACCTCGTCCAGAAACCACGT 8706402
Query 102099 CAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCA 102158
| | || | || | || ||| || || || || ||||| || || || ||||
Sbjct 8706401 C--GCGAGCGCATCATCGAGATTATCCGCGATGCTGTGGACATTGAGCAGGAGTTCCTCA 8706344
Query 102159 CAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTG 102218
| | || |||| || || || | || ||||||||| | |||||| || ||||| |
Sbjct 8706343 CCGACGCCTTGCCCGTGAATTTGATCGGCATGAACTGCGACTTGATGTCGCAATACATCG 8706284
Query 102219 AATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCA 102278
|||||||||| || ||| |||| || |||| ||| || ||| || | |
Sbjct 8706283 AATTTGTGGCGGACCGGCTACTGGTAGAGCTGGGCGTAGGCAAAATCTACAACACCAAAA 8706224
Query 102279 ACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGA 102338
|||| ||| |||||||| | || || || || ||||||||||| ||||||||||
Sbjct 8706223 ACCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGGAAGACCAACTTCTTTGAAAAGA 8706164
Query 102339 GAGTCGCCGAGTATCAACGT 102358
|| | ||||| || |||
Sbjct 8706163 AGGTGGGAGAGTACCAGCGT 8706144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989409675810295
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |