Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13746 421 8e-113 seq13747 150 2e-31 >seq13746 Length=16180835 Score = 421 bits (466), Expect = 8e-113 Identities = 1230/1873 (66%), Gaps = 30/1873 (2%) Strand=Plus/Plus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 |||||| | || || ||||| | || || || || || || | ||||||||||| Sbjct 14158236 CTTGTCGACGGTAAACTGAATAGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCC 14158295 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||||| ||||| |||| ||| ||||| || || || || ||| | || Sbjct 14158296 GGTTTTAAGACCAGCTTTCCAGGAGTAGAAATGAATGGATGTGAGCTTTCCATAGTTTGG 14158355 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 ||||| | ||||||||| | || || || ||||| || || || || | || || || Sbjct 14158356 CTCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCAGCGGC 14158415 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62274 |||||| ||| | | || || |||||||| | ||||| |||| |||| || | Sbjct 14158416 CATTTTAATGGTTGATTTCACTGAGATTTCCCATACTGTTTTGTAAAGGTCGCG-AACCT 14158474 Query 62275 CTTCTGGAA-GGTTTG--TATTCTGAATGGATCCACCATCTACC-ATAATCCTATTCTTG 62330 || |||| || || |||| ||||| ||||| || || || ||| |||||| Sbjct 14158475 TTTGGGGAATGGATTCAATATTTTGAATAGATCC-CCTGCTGGAGATTATCTGATTCTTC 14158533 Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390 || ||||| | ||| || | ||| || || | || || | ||| ||||||| ||| Sbjct 14158534 ATGTCATCGTCCCACAAATCCAGCTCCGTCAAGTCCCTCAGCAAATGATGGTTAACCACT 14158593 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 ||||| || || || | ||| | | || |||||||| | || || || || | ||| Sbjct 14158594 TGGAACTCCCCGGAGAGTACGCGTCTGGTATAAATATTTGTTGTGTAGGGCTCGAAGGAC 14158653 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510 || || || |||| ||| |||||||| ||||| || ||||| || || ||||||| Sbjct 14158654 TCGTTGTTACCCATAATCTGAGCAGTCGATGCTGTGGGCATCGGAGCAACCAATAGGGAG 14158713 Query 62511 TTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA 62569 ||||| | || | |||| |||| || || ||| || ||| | ||| ||| | | Sbjct 14158714 TTTCTGACTCCATGCTGTT-TGATAGACTCCTTCAGAGATTTCCAGTCCCAGAGACCAGT 14158772 Query 62570 CGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATA 62629 ||| | || || ||||| || ||||| | |||| |||| Sbjct 14158773 CGGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTTACTGGGCTTCCTTCATA 14158832 Query 62630 TGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATA 62689 || ||||| | ||| || || | || |||| ||||| ||||| | || || | || Sbjct 14158833 AGTTTCATAAGTTCCGTCTTTTTGGGCCAGTTCGCAACTGGCCTCCAGGGCTCCAAAGTA 14158892 Query 62690 AATGGTTTCAAAGATCTTCTTATTTA-GATCTTGTGCTTCCGGGCTATCAAATGGATAAT 62748 || |||||||| |||| | || | || | ||| ||| ||| || | |||||| Sbjct 14158893 GATTGTTTCAAAAATCTGTTGGTTCAAGAGGCT-TGCCTCCTCGCTTTCGTAGGGATAAC 14158951 Query 62749 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62808 | ||||| | |||||| || | ||| |||||||| || |||||||| | ||| ||| Sbjct 14158952 GCATAAGAATCAGCGCGTCAGCCAGTCCCTGAACACCGATTCCGATAGGACGATGCCTCA 14159011 Query 62809 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62868 |||| || | | || || || | |||||| | || |||||||| || |||||||| | Sbjct 14159012 TATTGGACTTCTTGGCCTCCGGCAGCGGATAAAAGTTGATATCTATTATCTTATTGAGGT 14159071 Query 62869 TTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA-- 62925 ||||| | | ||||| || ||||| || || || ||| || | || Sbjct 14159072 TTCTGGCCACCGTCTTTGTG-ACCTCCTTTAGCTTTTTGAAGTCATATGTCTTCTCGGGA 14159130 Query 62926 -TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984 | ||||||||||| | || | || |||| ||| || || || | ||| | || Sbjct 14159131 GTCACAAACATGTTGAGAGCGATGGAGGCCAAATTGCAAACTGCAATCTCGTCAGGTGAA 14159190 Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 | ||| | | || || ||||| ||||| || ||||| || || || | ||| ||||| Sbjct 14159191 GAATACTCAACAATTTCCGTGCACAGATTGCTGCACTTAATGGTGCCCACATTCTGTTGG 14159250 Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 || |||||| ||| || || ||||| | || ||| | ||| | ||||| || | || Sbjct 14159251 TTGCTCTTTCGGTTGCAGGCGTCCTTGAACAGCATGTAAGGATTTCCAGTCTCCACTTGC 14159310 Query 63105 GATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GATTTGTATCTCCTTT 63162 || || || || || ||| | | ||| | || || | | |||| | ||| | Sbjct 14159311 GACTCAATGATAGCAAACCACAAGGACT-GTGCTTTCACAGTTCGATTGGCGCGTCCCTC 14159369 Query 63163 CTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAG 63222 || || ||||| ||| | | ||| ||||| || ||||| |||| | | | || Sbjct 14159370 CTGTT-CGTATTTCACATAGAGTTTTTCAAACTCATCGCCCCACACATCATGGAGGCCAG 14159428 Query 63223 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63282 | |||| || |||||||| |||||||| || | | ||| |||||||||||| |||| Sbjct 14159429 GGCATTTATGGGGACACATTAACGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAAGA 14159488 Query 63283 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 |||| || ||||| || || ||| || | ||| | | || ||| || || || || ||| Sbjct 14159489 GATCTGGTATCCACAGGGC-ATAGAACAAATCGCGGGCTCGATGCTCTTCCTTGCCAGTA 14159547 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 ||||| ||||| || || ||| | | | ||| |||||||| || |||| || ||||| Sbjct 14159548 TTCTTCTTAAGGTCCAGAAACTCAAATACATCCGAATGCCAGGGCTCCAGATAAATGGCA 14159607 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | |||| ||||| ||| || |||||||| | || | || ||| ||| | ||| Sbjct 14159608 AAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATACCGCGCCACGTTGTTAAAGACT 14159667 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 |||| ||| |||| | || || ||| | ||||| || ||| | || || || | Sbjct 14159668 CTCAGCATAGGAACCAGGCCATTGGATGTGCCATTCGTTCCGCAAATCGAGGTACCCTTT 14159727 Query 63522 GCACGAATATTACTAATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63577 |||||||| ||| || ||||| || || || || || ||||| | || Sbjct 14159728 GCACGAAT----GCAATGGACGTTAAGACCAATACCACCAGCAGACTTGGAGATCATGGC 14159783 Query 63578 GCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 |||| | | | || | |||| || || ||| || | ||||| | || || || Sbjct 14159784 GCATTGCTCAACCGATTTGAAGATACCCTCGATGGAGTCGGCAGTCATGGTCAGGAGGAA 14159843 Query 63638 ACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63697 |||| |||| ||| ||||| | || | || ||| | || || |||||||| || Sbjct 14159844 ACAGGACGACAGCTGGGGACGATTCGTGGCAGCGGCAAAAAGTGTTGGCGAAGCGTGAGT 14159903 Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63757 || | || || || | ||||||||||| | || | || || || | ||| Sbjct 14159904 GAAATAACGCTCGGACAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTCCATG 14159963 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 |||||| | ||| || ||||| | |||||| || || | || | | ||| ||||| Sbjct 14159964 AATTCCGATTGCCACGCGCATAAGCATGTGTTGGGGCCGCTCGGCGACTTTTCCATTTAT 14160023 Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877 ||| | | ||| || |||| ||||||||| ||||| || || || |||||| || Sbjct 14160024 TTTAAGGAGGTAAGAACGCTCCAGAGTTTTAAACCCAAAGTAATTATAACCAAAGTCACG 14160083 Query 63878 TTCGTAAATAATA 63890 || ||||| ||| Sbjct 14160084 ATCATAAATTATA 14160096 >seq13747 Length=19884421 Score = 150 bits (166), Expect = 2e-31 Identities = 355/534 (66%), Gaps = 3/534 (1%) Strand=Plus/Plus Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 ||||| |||||||||||||| ||||| || || | ||||| || || || || ||| Sbjct 8706439 GCGAAGTCGCAGTGCAGACCTTCGTCCCTGGAGATAAGCTCGTTGGAGAAGGTCAGACCG 8706498 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||| | || ||||| || | ||| || || || || || ||| ||||| || Sbjct 8706499 GGCATCAAACCTCGCTTCTTCAACCAGAAGATAGAGGCAAAGCTGCCGCTGAAGAATATA 8706558 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-TC 33761 || || || |||||||| || || | | ||| ||| | ||| || | | | || Sbjct 8706559 CCCTCCACGGCAGCAAATGCGATGATGCGCTCCCCAAAGTTGGCTGACTTCGAAGAAATC 8706618 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || |||||||||| ||||| || || ||||||||| || |||||||| || Sbjct 8706619 CAGGCCAGAGCCCAATCTGCCTTGCGCTTCACCGCAGGCATCGTCTCAATGGCATTGAAC 8706678 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 || || | | | |||| || ||||||||||| | | ||| ||||| || Sbjct 8706679 AGGTATTCACGCTGGTGGGGATCTCGAATGTAAGTATCGATGAGCACACTGTACATCTCA 8706738 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 || || | |||||| ||||| || || || ||||||||||| | ||||| || | ||| Sbjct 8706739 GAGTGCACGTTTTCCATGGCGATTTGGAAACCGTAGAAACAGCGCGCCTCCGTGACCTGA 8706798 Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 || || || || || || | | || || ||||| |||||||| || ||||| Sbjct 8706799 ACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTCACAATTCCATCCGAAGCAGCAAAG 8706858 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 34061 || |||| || || || || | |||||| | || || |||||| || Sbjct 8706859 AAGGCCAGCACGTGGGAGATGAAGTGGCGTTCGTCGTCCTTAAGGCGATGCCAATCGGTG 8706918 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 | ||| || || | ||||| || || || ||||| || || || || |||||| Sbjct 8706919 AGATCCTTCGAGAGGTCCACCTCCTCGACAGTCCAGAAAGAGGCTTCAGCCTTT 8706972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629709357972720