Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq13745 114 1e-20 seq13746 107 2e-18 seq13748 105 7e-18 >seq13745 Length=6960332 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||||||||| || || | || ||||| || || ||||| || ||| Sbjct 840910 GCCGCCGCGCAGACGCAAAACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 840969 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| || ||||| || || || |||||||||| |||||||| ||||| Sbjct 840970 CAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGG 841029 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | ||||||| ||||| || Sbjct 841030 GATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCGGATGGCTCGAC 841089 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||| | || || ||||| || ||||| Sbjct 841090 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 841137 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || ||| || |||| ||| || Sbjct 841157 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 841216 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || |||||||||| |||||||| ||||| || || || ||||| | Sbjct 841217 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 841276 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||||| |||||| ||||| | ||| | |||||| Sbjct 841277 ATCTTAGCCTTCACATTCTCAATGGTGTCGGAGGGCTCGACCTCCAGGGTGATGGTCTTG 841336 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || || ||||| || ||||| Sbjct 841337 CCGGTGAGGGTCTTCACGAAGATCTGCAT 841365 >seq13746 Length=16180835 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||| | |||||||| || ||||||||||| || | |||| Sbjct 14254432 CGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGACCA 14254373 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 14254372 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 14254313 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | ||| | || || | || || ||||||| || | Sbjct 14254312 TC-CTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGAT 14254254 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | || || ||||| || ||||| Sbjct 14254253 GGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 14254218 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| || || ||||| || || Sbjct 2088063 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCCAGCTGCTTGCCG 2088004 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| |||||||| ||||| ||||| |||||||| ||| || || Sbjct 2088003 GCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCCTCTTTGTCCTGGATCTTAGCCTTC 2087944 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | ||||| ||||| | ||| | ||||||||||| | ||| Sbjct 2087943 ACATTCTCGATGGTGTCCGACGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTT 2087884 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 2087883 TTCACGAAGATTTGCAT 2087867 >seq13748 Length=23293914 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || |||||||| || || | Sbjct 9537221 CCACCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAC 9537162 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || || || |||||| ||| ||||| || || || Sbjct 9537161 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 9537102 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || ||| | | || | ||||||| |||||||||| Sbjct 9537101 ATTCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCGGAGGGCTCCACC 9537042 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | || || || ||||| ||||| ||||| || |||||| || Sbjct 9537041 TCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACGAAGATCTGCATACCT 9536991 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 |||||||| | ||| | || ||||| | || ||||| || || || || || || | Sbjct 9536765 CCGCCTCGCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGAC 9536706 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || || || |||||| ||| ||||| || || || Sbjct 9536705 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 9536646 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| | || | || | | || | || || | ||||||||| Sbjct 9536645 ATTCCCTCCTTGTCT-TGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAGGGCTCCAC 9536587 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | ||||| |||||||| || |||||||| || |||||| Sbjct 9536586 CTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTTACGAAGATCTGCATA 9536538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495978745200800