Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq13746 170 4e-37 seq13747 120 7e-22 seq3328 114 3e-20 seq13748 111 4e-19 >seq13746 Length=16180835 Score = 170 bits (188), Expect = 4e-37 Identities = 162/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||| || |||||||| ||||||||||| || || | ||| ||||| || || Sbjct 14254420 TGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGACCATCTTCCAGCTGC 14254361 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 14254360 TTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 14254301 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | |||||| ||||| ||||| || || || ||||| || || Sbjct 14254300 GCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTG 14254241 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || |||||||| ||| Sbjct 14254240 AGGGTCTTAACGAAGATCTGCATCTTG 14254214 >seq13747 Length=19884421 Score = 120 bits (132), Expect = 7e-22 Identities = 218/311 (70%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 238578 ACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCAT 238637 ||| |||| ||| |||||||| ||||| | ||| ||||| | ||||| ||||| Sbjct 16052045 ACTTACGACGACCTGTGGAATTCGGCCCAATTGCAACTGGTACGTGAGGGCAAGATGCAC 16052104 Query 238638 AGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACT-AGATCTCCAAAGGA 238696 | ||| | || ||||| |||||||| ||||| || |||||||| ||| |||| || | Sbjct 16052105 GGCTTCCTGCGCATGTACTGGGCTAAGAAGATCCTCGAATGGACAGAGA-CTCCCGAGCA 16052163 Query 238697 AGCTCTTAGA-TATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACG-GATCCT 238754 || || ||| || ||| || || ||||| ||| || ||||| ||| || || Sbjct 16052164 GGCCCT-AGAGTACGCCATTCTACTTAATGATAAGTACAGCCTGGACGG-ACGAGACCCC 16052221 Query 238755 AACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAG 238814 || |||||||| || ||||||||||| || | ||| | || || | || ||| || Sbjct 16052222 AATGGATACGTGGGGTGTATGTGGTCTATCGGAGGAGTCCATGACATGGGCTGGAAGGAA 16052281 Query 238815 AGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGAT 238874 || |||| ||||| || | | |||||||||||| |||| | | ||||| ||| Sbjct 16052282 CGATCTATCTTTGGGAAGATACGCTACATGAATTATCAAGGCTGTCGGCGTAAATTCGAT 16052341 Query 238875 GTAAATGCTTT 238885 ||||| || || Sbjct 16052342 GTAAACGCCTT 16052352 Score = 113 bits (124), Expect = 1e-19 Identities = 295/440 (67%), Gaps = 10/440 (2%) Strand=Plus/Minus Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT 268915 || || || ||||| | | ||||| || || ||||| || || || ||| ||| || Sbjct 8706866 CTGGCCTTCTTTGCTGCTTCGGATGGAATTGTGAACGAGAACCTGGTGGAGCGCTTCAGT 8706807 Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 || ||||| ||| | | || || | ||||| ||||| ||||| || || || ||||| Sbjct 8706806 CAGGAGGTTCAGGTCACGGAGGCGCGCTGTTTCTACGGTTTCCAAATCGCCATGGAAAAC 8706747 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAG 269035 | || || |||||||||||| | | || |||||||| || ||| | || | Sbjct 8706746 GTGCACTCTGAGATGTACAGTGTGCTCATCGATACTTACATTCGAGATCCCCACCAGCGT 8706687 Query 269036 AAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTG-TGAGaaaaaaaTCTGAATGGG 269093 || || || | | || |||| | ||| ||| | ||| || | || |||| Sbjct 8706686 GAATACCTGTTCAATGCCATTGAGA-CGATGC-CTGCGGTGAAGCGCAAGGCAGATTGGG 8706629 Query 269094 CTCTGAAATGGATAAA--CGATAGCGCGCCT--TACGGAGAAAGGTTAGTTGCTTTTGCC 269149 ||||| ||||| ||| || ||| | || || | | | || ||||| Sbjct 8706628 CTCTGGCCTGGATTTCTTCGA-AGTCAGCCAACTTTGGGGAGCGCATCATCGCATTTGCT 8706570 Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 || || || ||||||||||| || |||||| ||||||| ||||||||||| || Sbjct 8706569 GCCGTGGAGGGTATATTCTTCAGCGGCAGCTTTGCCTCTATCTTCTGGTTGAAGAAGCGA 8706510 Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269 || | ||||| || | || ||||| ||||| | || ||||||||||||| | ||| Sbjct 8706509 GGTTTGATGCCCGGTCTGACCTTCTCCAACGAGCTTATCTCCAGGGACGAAGGTCTGCAC 8706450 Query 269270 TGCGACTTCGCT-TGTTTAT 269288 |||||||||||| || |||| Sbjct 8706449 TGCGACTTCGCTGTGCTTAT 8706430 >seq3328 Length=1182 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || | || | || || || ||||| ||||| ||||| Sbjct 684 ATACCTCCTCGCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCC 625 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||| || || || || || ||||| || || || | | ||| || || || Sbjct 624 GACAGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGG 565 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||||||||| || || || || || | ||||||| || || Sbjct 564 GGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCA 505 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||| || || | || ||||| || ||||||||| Sbjct 504 ACTTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTTACGAAGATCTGCATT 454 >seq13748 Length=23293914 Score = 111 bits (122), Expect = 4e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || | || | || || || ||||| ||||| ||||| Sbjct 9536540 ATACCGCCTCGCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCC 9536481 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || ||||| || || || | | ||| || || || Sbjct 9536480 GACAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGG 9536421 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || || |||||||| || || || || || | |||||| || || Sbjct 9536420 GGGATTCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAGGGCTCC 9536361 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || || || ||||| | ||||| ||||| |||||||||||| Sbjct 9536360 ACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTG 9536307 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || | ||| | || || || ||||| || || ||||| Sbjct 9538820 ATTCCTCCGCGCAGACGGAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCC 9538761 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || ||||| || || || | | ||| || || || Sbjct 9538760 GACAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGG 9538701 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||||||||| || || || || || | ||| ||| || || Sbjct 9538700 GGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTGTCGGAGGGCTCA 9538641 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||| || || | || ||||| || ||||||||| Sbjct 9538640 ACTTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTTACGAAGATCTGCATT 9538590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151195570737292