Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq13746 123 2e-23 >seq13746 Length=16180835 Score = 123 bits (136), Expect = 2e-23 Identities = 204/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| || ||||| ||| | || | || ||||| || || | ||| Sbjct 12134491 ACGCCGGTGGAGCCAAATCCTCCTTCTCCACGCTCGGTATCCTCTAGCTTATCGACCAGC 12134432 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCTT 5619 |||| || || | | |||||||||||| | ||| || || ||||| || ||| || Sbjct 12134431 TCCAACTCTGGATAGAAAATGCGCTCGCAGATAAACTGAGCAATGCGGTCTCCGCGT-TT 12134373 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 ||||| || || || | ||| ||| || || || ||||| | ||| || ||||| Sbjct 12134372 CACCTCAAAGTCCACGTCG--GAATGGTTAAATAGAACGACGCCGAGGTTACCACGGTAA 12134315 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || | |||| ||| || || |||||||||||||||| ||| ||||||| || || || Sbjct 12134314 TCTTCATCTACCACTCCGGCACCCACGTCGATGAAGTTCTTAACCGCCAAACCAGACCGC 12134255 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 |||||||| || |||||| | || || || | ||| | || ||||| || Sbjct 12134254 GGAGCCACTCGTCCGTAGGAACCCTCTGGGACCTGGACTTGTAGGTCAGT 12134205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429982337531288