Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq13747 125 4e-24 seq13749 123 1e-23 seq13726 116 2e-21 >seq13747 Length=19884421 Score = 125 bits (138), Expect = 4e-24 Identities = 82/90 (91%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||||| ||| |||||||||| |||||||||| |||||||||||||||||||| Sbjct 16620083 AATAAAAAATTAAAGCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 16620142 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 16620143 CGACGCTCTAACCAACTGAGCTAATGGGCC 16620172 Score = 122 bits (134), Expect = 5e-23 Identities = 90/105 (86%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCA--AATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||||| | || ||| ||||| | | || |||||||||| |||||||||| ||||||| Sbjct 16626225 AAATAAATAAATAAAAAAAAGTTAGAAACTGGCCCATGAGGGGATCGAACCCGCGACCTT 16626166 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 16626165 CGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCGT 16626121 Score = 116 bits (128), Expect = 2e-21 Identities = 76/83 (92%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 18746629 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 18746570 Query 11515 CTGAGCTAATGGGCCGTCGACGA 11537 ||||||||||||||| |||| || Sbjct 18746569 CTGAGCTAATGGGCC-TCGAAGA 18746548 Score = 114 bits (126), Expect = 7e-21 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 9677565 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9677624 Query 11516 TGAGCTAATGGGCCGTC 11532 |||||||||||||| || Sbjct 9677625 TGAGCTAATGGGCCCTC 9677641 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || ||||||| | | |||||||||| |||||||||| ||||||||||||||||||| Sbjct 9678081 AACAAAAAATATATTCATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 9678140 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 9678141 ACGACGCTCTAACCAACTGAGCTAATGGGCC 9678171 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 16620736 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 16620677 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 16620676 CTGAGCTAATGGGCC 16620662 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 9677774 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9677833 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 9677834 TGAGCTAATGGGCC 9677847 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 9677935 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9677994 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 9677995 TGAGCTAATGGGCC 9678008 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 18746792 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 18746733 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 18746732 TGAGCTAATGGGCC 18746719 >seq13749 Length=23697760 Score = 123 bits (136), Expect = 1e-23 Identities = 94/109 (86%), Gaps = 7/109 (6%) Strand=Plus/Plus Query 11429 AAATA--TAGAATTAATAAAAAA----TCAAATTGGCCCATGAAAGGATCGAACCTTCGA 11482 ||||| || |||||| |||||| |||||| ||||||||| |||||||||| ||| Sbjct 1742777 AAATAACTAAAATTAAAAAAAAAGTTATCAAAT-GGCCCATGAGGGGATCGAACCCGCGA 1742835 Query 11483 CCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1742836 CCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCGT 1742884 >seq13726 Length=1562580 Score = 116 bits (128), Expect = 2e-21 Identities = 83/94 (88%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 11439 TTAATAAAA--AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| |||| ||| ||| ||||||||| |||||||||| ||||||||||||||||| Sbjct 1134380 TTAAAAAAAGTAATTTAAT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 1134322 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||||||||||||||||||| Sbjct 1134321 GCACGACGCTCTAACCAACTGAGCTAATGGGCCG 1134288 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261447382981924