Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq1080 136 2e-27 seq6246 107 7e-19 >seq1080 Length=1007 Score = 136 bits (150), Expect = 2e-27 Identities = 80/82 (98%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 44895 CCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACC 44954 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 924 CCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACC 983 Query 44955 CA-CATGCTGTACTGCACCTGG 44975 || ||||||||||||||||||| Sbjct 984 CATCATGCTGTACTGCACCTGG 1005 >seq6246 Length=1444 Score = 107 bits (118), Expect = 7e-19 Identities = 61/62 (98%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 44798 AGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCAT 44857 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 62 AGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCAT 3 Query 44858 GT 44859 || Sbjct 2 GT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192608547787600