Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13746 114 3e-20 seq13747 91.5 3e-13 seq13723 89.7 1e-12 seq13705 89.7 1e-12 seq13728 86.0 1e-11 seq13692 86.0 1e-11 seq2230 86.0 1e-11 >seq13746 Length=16180835 Score = 114 bits (126), Expect = 3e-20 Identities = 219/323 (68%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 218504 ACATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGG 218563 ||||| || | | ||||||||| || |||| | |||| ||||| || | Sbjct 12128269 ACATCACCTACGCGGACTTCATCAACCTGGAGTTGGTTCTCTTCTCTAACGCCGACAACG 12128328 Query 218564 AGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTG 218623 |||| || |||||||| ||||||||||| | ||||| ||||| ||| || | || Sbjct 12128329 AGCGCTCCATTCCCAGTCTGGTGGATGGCTTGAAGCCCGGCCAGCGCAAGGTCATGTTCA 12128388 Query 218624 CCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTAT 218683 || |||||| | ||| | ||| | ||||| || ||||| || |||| || Sbjct 12128389 CCTGCTTCAAGAGAAACGATAAGCGCGAAGTGAAGGTAGCCCAGTTGTCCGGTTCAGTGG 12128448 Query 218684 CCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGG 218743 |||| || || | |||||||||||| ||| | |||||| |||| ||| | ||| Sbjct 12128449 CCGAGATGTCGGCCTACCATCACGGCGAGGTGTCACTGCAGATGACCATCGTAAACTTGG 12128508 Query 218744 CACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTT 218803 | ||| ||||||| ||| |||||||| || ||||| ||| |||||||| ||| Sbjct 12128509 CCCAGAACTATGTCGGCTCGAACAACATTAATCTGCTGGAGCCCCGAGGTCAGTTCGGTA 12128568 Query 218804 CTCGTCTATTGGGTGGAAAGGAT 218826 |||| | ||| || |||||| Sbjct 12128569 CTCGGTTGACGGGCGGCAAGGAT 12128591 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142057 CTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 6503384 CTTTGGCGCAGCGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATCCCCG 6503325 Query 142117 CCAG 142120 | || Sbjct 6503324 CAAG 6503321 >seq13747 Length=19884421 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 9158558 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 9158499 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 9158498 CCCCACGTTGGGC 9158486 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 9636839 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 9636780 Query 142564 CCCACATCGGGCAGAAG 142580 ||||| | |||| |||| Sbjct 9636779 CCCACGTTGGGC-GAAG 9636764 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 18767073 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 18767132 Query 142564 CCCACATCGGGCAGAAG 142580 ||||| | |||| |||| Sbjct 18767133 CCCACGTTGGGC-GAAG 18767148 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 8759864 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 8759805 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 8759804 CCCCGCAAGGGA 8759793 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 9158001 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 9157942 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 9157941 CCCACGTTGGGC 9157930 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 9159117 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 9159058 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 9159057 CCCACGTTGGGC 9159046 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 9637235 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 9637176 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 9637175 CCCACGTTGGGC 9637164 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 9637692 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 9637633 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 9637632 CCCACGTTGGGC 9637621 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 9638063 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 9638004 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 9638003 CCCACGTTGGGC 9637992 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 18738422 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 18738363 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 18738362 CCCACGTTGGGC 18738351 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 18742130 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 18742071 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 18742070 CCCACGTTGGGC 18742059 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 18747230 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 18747171 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 18747170 CCCACGTTGGGC 18747159 >seq13723 Length=1428709 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1101591 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1101650 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1101651 CCCACGTTGGGC 1101662 >seq13705 Length=569066 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 120458 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 120517 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 120518 CCCACGTTGGGC 120529 >seq13728 Length=1584923 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| || Sbjct 1035971 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGGGC 1036030 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1036031 CCCACGTTGGGC 1036042 >seq13692 Length=240082 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| || Sbjct 81612 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGGGC 81553 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 81552 CCCACGTTGGGC 81541 >seq2230 Length=1102 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| || Sbjct 984 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGGGC 925 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 924 CCCACGTTGGGC 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027655737232909