Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq13747 109 4e-19 seq4517 104 2e-17 seq1677 98.7 8e-16 seq13746 91.5 1e-13 seq13745 82.4 6e-11 seq13647 82.4 6e-11 >seq13747 Length=19884421 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 37840 TGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCA 37899 ||||||| |||| ||| | || || || || ||||| |||||||| | |||||| Sbjct 16052058 TGTGGAATTCGGCCCAATTGCAACTGGTACGTGAGGGCAAGATGCACGGCTTCCTGCGCA 16052117 Query 37900 TGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACCGCGCTCAACTACG 37959 |||| ||| ||||| || | |||||| | || | | || || || | |||| Sbjct 16052118 TGTACTGGGCTAAGAAGATCCTCGAATGGACAGAGACTCCCGAGCAGGCCCTAGAGTACG 16052177 Query 37960 CCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGGCT 38019 ||||| || ||||||||||||||| ||||||| || || ||||| || ||||| || | Sbjct 16052178 CCATTCTACTTAATGATAAGTACAGCCTGGACGGACGAGACCCCAATGGATACGTGGGGT 16052237 Query 38020 GTTTGTGGTCTAT 38032 || |||||||||| Sbjct 16052238 GTATGTGGTCTAT 16052250 >seq4517 Length=1281 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1229 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1170 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 1169 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1139 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1229 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1170 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 1169 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1139 >seq1677 Length=1058 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| ||||||||| |||||| |||||||||||||||| | ||||||||||||| Sbjct 1006 CATGTATTAGCTCTAGAAATACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 947 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 946 ATAACTGATATAATGAGCCTTTTGCGGTTTC 916 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| ||||||||| |||||| |||||||||||||||| | ||||||||||||| Sbjct 1006 CATGTATTAGCTCTAGAAATACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 947 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 946 ATAACTGATATAATGAGCCTTTTGCGGTTTC 916 >seq13746 Length=16180835 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/238 (70%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 33892 CAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTG 33951 |||| || ||| || | ||| || ||||||||||| || || ||||||||| |||||| Sbjct 2088101 CAAT-GATACCACCGCGCAGACGGAGCACCAGATGCAGAGTCGACTCCTTCTGGATGTTG 2088043 Query 33952 TAATCTGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTG 34010 || || | || || || | || |||| ||||||||||| || ||||| |||||||| Sbjct 2088042 TAGTCGGA-AAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG 2087984 Query 34011 ATCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAG 34069 ||| || | || |||||||||| || || ||| | ||| | | || | Sbjct 2087983 ATCTGGAGGGATGCCCTCTTTGTCCTGGATCTTAGCCTTCA-CATTCTCGATGGTGTCCG 2087925 Query 34070 TAGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| |||| || || || || ||||| || |||||||| ||||||||||| Sbjct 2087924 ACGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 2087867 >seq13745 Length=6960332 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || ||||||| || || || ||||||||| |||||||| || | | Sbjct 841367 CCTCCACGCAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 841426 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||||||||| || ||||| ||||||||||| || Sbjct 841427 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGG 841486 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 841487 ATGCCCTCCTTGTCC 841501 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || ||||||||||| || || ||||||||| |||||||| || | | Sbjct 841823 CCTCCGCGGAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 841882 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||| ||||| || ||||| ||||||||||| || Sbjct 841883 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 841942 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 841943 ATGCCCTCCTTGTCC 841957 >seq13647 Length=96352 Score = 82.4 bits (90), Expect = 6e-11 Identities = 76/90 (84%), Gaps = 5/90 (6%) Strand=Plus/Minus Query 115532 ATGTATT-GCTCTAGAATTA-CCAC-GTTAT-CCAAGTAACTGAGTAAGATCTAAGGAAC 115587 ||||||| |||||||||||| |||| ||||| ||||||||||| | |||||||||||| Sbjct 41702 ATGTATTAGCTCTAGAATTAACCACAGTTATTCCAAGTAACTGTTAACGATCTAAGGAAC 41643 Query 115588 CAAAACT-GATATATTGAGCCATTCGTGGT 115616 || |||| |||||| |||||| || | ||| Sbjct 41642 CATAACTGGATATAATGAGCCTTTTGCGGT 41613 Score = 82.4 bits (90), Expect = 6e-11 Identities = 76/90 (84%), Gaps = 5/90 (6%) Strand=Plus/Minus Query 114335 ATGTATT-GCTCTAGAATTA-CCAC-GTTAT-CCAAGTAACTGAGTAAGATCTAAGGAAC 114390 ||||||| |||||||||||| |||| ||||| ||||||||||| | |||||||||||| Sbjct 41702 ATGTATTAGCTCTAGAATTAACCACAGTTATTCCAAGTAACTGTTAACGATCTAAGGAAC 41643 Query 114391 CAAAACT-GATATATTGAGCCATTCGTGGT 114419 || |||| |||||| |||||| || | ||| Sbjct 41642 CATAACTGGATATAATGAGCCTTTTGCGGT 41613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396995865866698