Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq13746 176 4e-39 seq13748 86.0 6e-12 seq13745 86.0 6e-12 >seq13746 Length=16180835 Score = 176 bits (194), Expect = 4e-39 Identities = 1146/1819 (63%), Gaps = 56/1819 (3%) Strand=Plus/Minus Query 122880 TTGaaaaaaaTCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCT 122939 || ||| |||| ||||||| ||||||| || ||||| ||||| |||||||| || Sbjct 14160028 TTAAAATAAAT---GGAAAAG-TCGCCGAGCGGCCCCAACACATGCTTATGCGCGTGGCA 14159973 Query 122940 ATAGGCGTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAA 122999 || || | || ||| |||||||| || || || ||| | ||| |||| | Sbjct 14159972 ATCGGAATTCATGGAGAAGACATCGATGCTGCCGTGGAGACGTACAACTTGCTGTCCGAG 14159913 Query 123000 AAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTG 123059 | |||||| ||||| || || | || ||||| | |||||| || ||| || Sbjct 14159912 CGTTATTTCACTCACGCTTCGCCAACACTTTTTGCCGCTGCCACGAATCGTCCCCAGCTG 14159853 Query 123060 TCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACT-TT 123118 || || ||||| | || ||| || | ||| |||| ||||||| || | || Sbjct 14159852 TCGTCCTGTTTCCTCCTGACCATGACTGCCGACTCCATCGAGGGTATCTTCAAATCGGTT 14159793 Query 123119 GCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGT 123178 | || || |||| |||| ||||| | || || || || || | ||||| || | | Sbjct 14159792 GAGCAAT-GCGCCATGATCTCCAAGTCTGCTGGTGGTATTGGTCTTAACGTCCATTGCAT 14159734 Query 123179 AAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCAT 123238 | | || | | || | | || | || | || || || | | || Sbjct 14159733 TCGTGCAAAGGGTACCTCGATTTGCGGAACGAATGGCACATCCAATGGCCTGGTTCCTAT 14159674 Query 123239 GCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGG 123295 |||| |||| | || |||| | |||| | || || ||||| || ||| || || Sbjct 14159673 GCTGAGAGTCTTTAACAACGTGGCGCGGTATGTGGATCAGGGTGGTGGCAAGCGGCCGGG 14159614 Query 123296 CGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAAT-TTAA 123354 || | || || ||||| || || ||||| ||||| | || ||| | | |||| Sbjct 14159613 AGCCTTTGCCATTTATCTGGAGCCCTGGCATTCGGATGTATTTGAGTTTCTGGACCTTAA 14159554 Query 123355 AACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTAC 123414 | | || | || |||||| | ||||||||||||||| || || | ||| ||| Sbjct 14159553 GAAG-AATACTGGCAAGGAAGAGCATCGAGCCCGCGATTTGTTCTATGCCCTGTGGATAC 14159495 Query 123415 CCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATC 123474 | ||| | || ||| ||| || | | | | | | |||||| | ||||||||| || Sbjct 14159494 CAGATCTCTTCATGAAACGAGTGGAGGCCAATGAGGACTGGTCGTTAATGTGTCCCCATA 14159435 Query 123475 GGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACG 123534 || || ||| | || || | ||| || ||||||| | | || | | |||||| Sbjct 14159434 AATGCCCTGGCCTCCATGATGTGTGGGGCGATGAGTTTGAAAAACTCTATGTGAAATACG 14159375 Query 123535 AGCGCGAAGGCAAACAGGTTAGTCAGGTTCCG---GCAC-GTGATT-TGTTCAAATT--T 123587 | | || || || | | || | | |||| || || || | || | Sbjct 14159374 AACAGGAGGG---ACGCGCCAATCGAACTGTGAAAGCACAGTCCTTGTGGT----TTGCT 14159322 Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || || || | ||||| || || |||| || |||||||| | ||| |||||||||||| Sbjct 14159321 ATCATTGAGTCGCAAGTGGAGACTGGAAATCCTTACATGCTGTTCAAGGACGCCTGCAAC 14159262 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 | || | ||| || || |||| || || || || || ||||| ||| | |||||| Sbjct 14159261 CGAAAGAGCAACCAACAGAATGTGGGCACCATTAAGTGCAGCAATCTGTGCACGGAAATT 14159202 Query 123708 ATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA- 123766 | || || | || | | || || || |||||||| || || | || Sbjct 14159201 GTTGAGTATTCTTCACCTGACGAGATTGCAGTTTGCAATTTGGCCTCCATCGCTCTCAAC 14159142 Query 123767 -TCGTTGCGTC----GAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAA 123821 | ||| | | || || | | | | ||| ||| ||| || | ||||| Sbjct 14159141 ATGTTTGTGACTCCCGAGAAGA---CATATGACTTCAAAAAGCTAAAGGAGGTCACAAAG 14159085 Query 123822 ACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCG 123881 || || | | || | || || || || ||| | || |||||||| || ||| || Sbjct 14159084 ACGGTGGCCAGAAACCTCAATAAGATAATAGATATCAACTTTTATCCGCTGCCGGAGGCC 14159025 Query 123882 CGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCG 123941 ||| ||| ||| || | || ||||| | || |||| || |||| |||||| Sbjct 14159024 AAGAAGTCCAATATGAGGCATCGTCCTATCGGAATCGGTGTTCAGGGACTGGCTGACGCG 14158965 Query 123942 TTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATA 124001 | | | |||| || ||||||||||| || |||| | | || || || Sbjct 14158964 CTGATTCTTATGCGTTATCCCTACGAAAGCGAGGAGGCAAGCCTCTTGAACCAACAGATT 14158905 Query 124002 GCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGC 124061 |||||||| || | || || ||||||| || |||||||| || ||| |||| Sbjct 14158904 TTTGAAACAATCTACTTTGGAGCCCTGGAGGCCAGTTGCGAACTGGCCCAAAAAGACGGA 14158845 Query 124062 GCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGG 124121 | || |||| ||| | || ||||| | || || ||| ||||||||||||||||| Sbjct 14158844 ACTTATGAAACTTATGAAGGAAGCCCAGTAAGTAAGGGAATTCTGCAGTACGACATGTGG 14158785 Query 124122 AATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGAC--GC 124179 || || ||||| | | |||||||||| | | || | | |||| | || Sbjct 14158784 GATAAAACGCCGACTGGTCTCTGGGACTGGAAATCTCTGAAGGA--GTCTATCAAACAGC 14158727 Query 124180 ACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTT 124239 | || | | ||||| || ||||| || ||||| || ||| | |||||||| ||| Sbjct 14158726 ATGGAGTCAGAAACTCCCTATTGGTTGCTCCGATGCCCACAGCATCGACTGCTCAGATTA 14158667 Query 124240 TAGGAAACAACGAATCCTTCGAGCCGTTCACTAACA---ATTTGTACGTGCGACGAGTGT 124296 | || |||||||| ||||||||||| | ||| |||| |||| ||| |||| || Sbjct 14158666 TGGGTAACAACGAGTCCTTCGAGCCCTACAC-AACAAATATTTATAC--CAGACGCGTAC 14158610 Query 124297 TAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATT 124356 | |||| || || |||||| | || ||||||||| || |||||| || | | ||| Sbjct 14158609 TCTCCGGGGAGTTCCAAGTGGTTAACCATCATTTGCTGAGGGACTTGACGGAGCTGGATT 14158550 Query 124357 TGTACGATGAAAACATGCGCAACGAAATTAT-TGCGGCCGGTGGCAGCGTGCAGCGCATC 124415 ||| || || ||||| || | || || | | || || || | || || Sbjct 14158549 TGTGGGACGATGACATGAAGAATCAGATAATCTCCAGCAGG-GGATCTATTCAAAATATT 14158491 Query 124416 GCTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAA 124471 | || ||||| || | || | || |||||||| || |||||||| | ||| Sbjct 14158490 GAATCCATTCCCCAAAAGGTTCGCGACCTTTACAAAACAGTATGGGAAATCTCAGTGAAA 14158431 Query 124472 TAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTT 124531 | ||| |||| ||||||||| || || || |||| | ||||| || || || || Sbjct 14158430 TCAACCATTA----AAATGGCCGCTGATCGCGGTGCGTTTATAGATCAGAGCCAGTCCTT 14158375 Query 124532 TAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTG 124591 || | ||| || || || | ||| | | || ||| || | || | || Sbjct 14158374 CAATATCCATGTGGCAGAGCCAAACTATGGAAAGCTCACATCCATTCATTTCTACTCCTG 14158315 Query 124592 GAGCAGC-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCA 124650 || ||| || || ||||| || ||||| ||||| | || || || || ||| | || | Sbjct 14158314 GA-AAGCTGGTCTTAAAACCGGAATGTACTACTTGCGCACAAAGCCAGCTGCCAACGCTA 14158256 Query 124651 TTCAATTTACCGTCGACAA 124669 |||| |||||||||||||| Sbjct 14158255 TTCAGTTTACCGTCGACAA 14158237 >seq13748 Length=23293914 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||||||||| || | | ||| | ||| || || || ||||| ||||| || || || Sbjct 9538820 ATTCCTCCGCGCAGACGGAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCC 9538761 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || ||||| ||| | ||||| || |||||||| || Sbjct 9538760 GACAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGG 9538701 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || ||||| || || | || | || | ||||||||| | ||| Sbjct 9538700 GGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCA-CGTTCTCGATGGTGTCGGAGGGCTC 9538642 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || || ||||| | || ||||| || || ||||| Sbjct 9538641 AACTTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTTACGAAGATCTGCAT 9538591 Score = 84.2 bits (92), Expect = 2e-11 Identities = 230/340 (68%), Gaps = 13/340 (4%) Strand=Plus/Plus Query 102171 CCAATAATTCCGCATCCCAATCGACCGCCCGAATTGCCTGTGGTTTTGCTCAAAGGATGA 102230 ||||| | ||||||||| | ||| | || | |||||| |||| ||||||| || Sbjct 5397074 CCAATCACTCCGCATCCAATTCGGGCACCAGCATTGCCGGTGGACTTGCTCAGCTCGTG- 5397132 Query 102231 TCCGTTCGA-CCCAAATCGTCGCGGTTTGAATGCACGACCAGACTGCGGCCGACGACGCT 102289 |||| | ||||| |||||| | | || || |||| |||| || | || ||| Sbjct 5397133 TCCGCCCTTGCCCAAGTCGTCGGCATCGGCGTGGACAACCACGGTGCGTCCAATGATGCT 5397192 Query 102290 CAACGG-GCCGTATAGAGTGATGGCGTCTGTCG-TCATGTTGACGGCGGTCAAGGCGTTG 102347 | ||| ||| | |||||||| | |||| | ||| |||| ||| ||| | Sbjct 5397193 -ATCGGCGCCAAAGAGAGTGATCTTGGA-GTCGCTGATGGTGACCTTGGTGG-GGCAGTC 5397249 Query 102348 GACACTTTAGCTTCAACGTTTCCCAAGTCGCCGACGTGCCG--TATGATTGAATCGGGCG 102405 | || | ||| || | ||| ||||||||||| | ||| || | | || | |||| | Sbjct 5397250 GCCAGT--AGCCTCGATGTTGCCCAAGTCGCCCAAGTGACGGTTCTCATCG--CCGGGAG 5397305 Query 102406 CACCATGATCCATGTTGAACGGATTGAAATGTTCGCCGGCCGAGGTGCATCCGTTGCTCA 102465 | || || ||| || | | || |||||||| ||||| || |||| |||||| | Sbjct 5397306 CGCCGTGCTCCTTGCCGTAGGGGTTGAAATGGGGGCCGGAGGACATGCAGCCGTTGGTGT 5397365 Query 102466 TGTCTCCGAATTCGTGAACGTGAAAGCCGTGCAAACCTTT 102505 |||||||||| ||||| || || |||||||||| ||| || Sbjct 5397366 TGTCTCCGAACTCGTGCACATGGAAGCCGTGCAGACCCTT 5397405 >seq13745 Length=6960332 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||||||||| | | ||| ||||| || || || ||||| ||||| || || ||| Sbjct 841820 ATGCCTCCGCGGAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 841879 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||| || ||||| ||| | |||| || ||||| || || Sbjct 841880 GACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGG 841939 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || || | || | ||||||||| | |||| Sbjct 841940 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGAGGGCTCG 841999 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | |||||||| || || || || || || || ||||| Sbjct 842000 ACCTCCAGGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 842049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451925517600040