Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq13746 203 4e-47 seq13747 134 2e-26 >seq13746 Length=16180835 Score = 203 bits (224), Expect = 4e-47 Identities = 912/1420 (64%), Gaps = 34/1420 (2%) Strand=Plus/Plus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| || | ||| |||||| ||| || || || ||||| ||||| ||| |||| Sbjct 14158597 AACTCCCCGGAGAGTACGCGTCTGGTATAAATATTTGTTGTGTAGGGCTCGAAGGACTCG 14158656 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 |||||||||| || || || || || ||||||||||| || || | | ||| ||| Sbjct 14158657 TTGTTACCCATAATCTGAGCAGTCGATGCTGTGGGCATCGGAGCAACCAATAGGGAGTTT 14158716 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTT-GT 116054 | || || | | || ||||| || | | |||||| || || | | | Sbjct 14158717 CTGACTCCATGCTGTTTGATAGACTCCTTCAGAGATTTCCAGTCCCAGA-GACCAGTCGG 14158775 Query 116055 CTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 116114 | |||||||| || |||| || || || | |||| ||| ||| | || Sbjct 14158776 CGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTTACTGGGCTTCCTTCATAAGT 14158835 Query 116115 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 116174 ||||| | || || | |||| |||| | || ||||| |||||| | || || Sbjct 14158836 TTCATAAGTTCCGTCTTTTTGGGCCAGTTCGCAACTGGCCTCCAGGGCTCCAAAGTAGAT 14158895 Query 116175 TGTCTCAAAAATGCGAGCATTCATT-GCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC 116233 ||| |||||||| | |||| | |||| |||| ||| || | | || | || Sbjct 14158896 TGTTTCAAAAATCTGTTGGTTCAAGAGGCTTG-CCTCCTCGCTTTCGTAGG-GATAACGC 14158953 Query 116234 ACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 116292 | || ||| | | || || || || || ||||||| || || || ||||| |||||| Sbjct 14158954 ATAAGAATCAGCGCGTCAGCCAGTCCCTGAACACCGATTCCGATAGGACGATGCCTCATA 14159013 Query 116293 TTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 116352 || ||||| || | || |||||||| || |||| || | | |||| || ||| Sbjct 14159014 TTGGACTTCTTGGCCTCCGGCAGCGGATAAAAGTTGATATCTATTATCTTATTGAGGTTT 14159073 Query 116353 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 116412 ||| || |||||||| || | ||||||| | | ||| | | |||| | Sbjct 14159074 CTGGCCACCGTCTTTGTGACCTCCTTTAGCTTTTTGAAGTCATATGTCT---TCTCGGGA 14159130 Query 116413 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472 | ||| || | || ||||| || |||| ||| || || | |||| || | Sbjct 14159131 GTCACAAACATGTTGAGAGCGATGGAGGCCAAATTGCAAACTGCAATCTCGTCAGGTGAA 14159190 Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 | ||||| | ||||||||| |||| ||| | |||||||||||||| |||| ||| Sbjct 14159191 GAATACTCAACAATTTCCGTGCACAGATTGCTGCACTTAATGGTGCCCACATTCTGTTGG 14159250 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || |||| ||| || || |||||| | ||||| || || | || |||||| ||| Sbjct 14159251 TTGCTCTTTCGGTTGCAGGCGTCCTTGAACAGCATGTAAGGATTTCCAGTCTCCACTTGC 14159310 Query 116593 GACTTGAGAATAGCCTTCCATACATCGGC--GGCTGGCACAGTGGCGTTGGCTCGCCCCT 116650 |||| | ||||| || ||| | | ||| |||||| ||||| || |||| Sbjct 14159311 GACTCAATGATAGCAAACC--ACAAGGACTGTGCTTTCACAGTTCGATTGGCGCGTCCCT 14159368 Query 116651 CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTC-ACCCACAGCCTCTGAGAGCCCT 116709 ||| ||||| || ||||| |||||||| || |||||| | || ||| || Sbjct 14159369 CCTGTTCGTATTTCACATAGAGTTTTTCAAACTCATCGCCCCACA-CATCATGGAGGCCA 14159427 Query 116710 GGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 116769 || |||| ||||| | | ||||| | || |||| || || ||||||||| Sbjct 14159428 GGGCATTTATGGGGACACATTAACGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAAG 14159487 Query 116770 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 116829 || ||||| ||||| || || |||| | ||| || ||| ||||| | || | Sbjct 14159488 AGATCTGGTATCCACAGGGCATAGAACAAATCGCGGGCTCGATGCTCTTCCTTGCCAGTA 14159547 Query 116830 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 116889 || | |||| ||| || | | ||||| ||||| || ||||| || | || Sbjct 14159548 TTCTTCTTAAGGTCCAGAAACTCAAATACATCCGAATGCCAGGGCTCCAGATAAATGGCA 14159607 Query 116890 ATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGC--CGTTGCGTTAAATA 116944 | | ||| || | |||| |||| | ||||||| ||| |||| |||||| | Sbjct 14159608 AAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATACCGCGCCACGTT--GTTAAAGA 14159665 Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG--ACTT 117002 | | ||||| |||| | |||| ||| |||||| || || | ||| |||| || Sbjct 14159666 CTCTCAGCATAGGAACCAGGCCATTGGATGTGCCATTCGTTCCGCAAAT-CGAGGTAC-C 14159723 Query 117003 GTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGC 117062 || || | | |||| || | ||||||||| || || |||| ||||| || Sbjct 14159724 CTTTGCACGAATGCAATGGACGTTAAGACCAATACCACCAGCAGACTTGGAGATCATGGC 14159783 Query 117063 GCACTCCGTGAGACTG--CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 117120 ||| | | | | || | | |||| || ||||| ||||| | | | | | |||| Sbjct 14159784 GCATTGC-TCA-ACCGATTTGAAGATACCCTCGATGGAGTCGGCAGTCATGGTCAGGAGG 14159841 Query 117121 AAGCAGCTCGACATTTGTGGCC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178 || ||| ||||| || || | || ||| ||||| || || ||||| | |||| Sbjct 14159842 AAACAGGACGACAGCTGGGGACGATTCGTG--GCAGCGGCAAAAAGTGTTGGCGAAGCGT 14159899 Query 117179 GGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCC 117238 | |||| || | ||||| | | ||| ||||||| | ||| |||||||| | Sbjct 14159900 GAGTGAAATAACGCTCGGACAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTC 14159959 Query 117239 CGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 | ||||| ||||||| || ||||||| ||||| |||||| Sbjct 14159960 CATGAATTCCGATTGCCACGCGCATAAGCATGTGTTGGGG 14159999 Score = 107 bits (118), Expect = 2e-18 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986 ||| ||||| ||| | | || || || || ||||| | ||||| || ||||| || || Sbjct 12128591 ATCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCTCGGGGCTCCAGCAGATTAATGTT 12128532 Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 176045 ||| ||||| | ||||| | ||||| || || || || ||| || || || || || | Sbjct 12128531 GTTCGAGCCGACATAGTTCTGGGCCAAGTTTACGATGGTCATCTGC-AGTGACACCTCGC 12128473 Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105 ||||||||||||||||| | || ||||| | | | |||||| || ||||||| || Sbjct 12128472 CGTGATGGTAGGCCGACATCTCGGCCACTGAACCGGACAACTGGGCTACCTTCACTTCGC 12128413 Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 176165 ||| ||| | | |||||| | |||||||||| | ||| ||||| | ||| | Sbjct 12128412 GCTTATCGTTTCTCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTCAAGCCAT 12128353 Query 176166 C 176166 | Sbjct 12128352 C 12128352 >seq13747 Length=19884421 Score = 134 bits (148), Expect = 2e-26 Identities = 288/422 (68%), Gaps = 10/422 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||| ||| || |||||||| |||||||| || || ||| ||||||| Sbjct 8706150 GTACTCTCCCACCTTCTTTTCAAAGAAGTTGGTCTTCCCGTCCAGCGAGATCATCTCCAT 8706209 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC-ACCCCAATCTGTTTGAGGAGAC 127349 |||| || ||||| || | ||| | ||| ||| | || || | || | || || | Sbjct 8706210 GAAATTGAAAGGGTTTTTGGTGTTGTAGATT-TTGCCTACGCCCAGCTCTACCAGTAGCC 8706268 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | |||| || | || ||||| | |||||| || ||||||| ||||| | || | Sbjct 8706269 GGTCCGCCACAAATTCGATGTATTGCGACATCAAGTCGCAGTTCATGCCGATCAAATT-C 8706327 Query 127410 ATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 | ||| | ||||| || |||| ||| ||||||||||||||| || || | || || Sbjct 8706328 ACGGGCAAGGCGTCGGTGAGGAACTCCTGCTCAATGTCCACAGCATCGCGGATAATCTCG 8706387 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGT-CTTGAAGAGTTCCACAGCAAAC 127525 || || | | | | || || | | | || || ||| | |||||| || Sbjct 8706388 ---ATGATGCGCTCGCGACGTGGTTTCTGGACGAGGTGCTGGAACATAAGCACAGCGAAG 8706444 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| ||||| ||||| | |||||| || || || |||||| |||||| ||||| Sbjct 8706445 TCGCAGTGCAGACCTTCGTCCCTGGAGATAAGCTCGTTGGAGAAGGTCAGACCGGGCATC 8706504 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 | ||| ||||||||||||||||| || | ||| ||| |||||| || |||||| Sbjct 8706505 AAACCTCGCTTCTTCAACCAGAAGATAGAGGCAAAGCTGCCGCTGAAGAATATACCCTCC 8706564 Query 127646 AC 127647 || Sbjct 8706565 AC 8706566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613401761118840