Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13746 232 8e-56 seq13747 113 5e-20 >seq13746 Length=16180835 Score = 232 bits (256), Expect = 8e-56 Identities = 941/1486 (63%), Gaps = 22/1486 (1%) Strand=Plus/Plus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || || ||||||| ||| | || |||| ||||| || || || ||||| || Sbjct 14158237 TTGTCGACGGTAAACTGAATAGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCCG 14158296 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 || || | ||| |||| |||||||| || || | || ||| | || Sbjct 14158297 GTTTTAAGACCAGCTTTCCAGGAGTAGAAATGAATGGATGTGAGCTTTCCATAGTTTGGC 14158356 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 |||| | ||| ||||| | || || |||||||| ||||| ||||| | |||||| ||| Sbjct 14158357 TCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCAGCGGCC 14158416 Query 47154 ATATCTAAAA--TAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAAT 47209 || | ||| | | ||| || || |||||||||||||| |||| | || Sbjct 14158417 ATTT-TAATGGTTGA---TTTCACTGAGATTTCCCATACTGTTTTGTAAAGGTCGCGAAC 14158472 Query 47210 GTCTTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgttttt 47266 | || || | |||| | |||||||||||||||| | | | || || | || || Sbjct 14158473 CTTTTGGGGAATGGATTCAATATTTTGAATAGATCCCCTGCTGGAGATTATCTGATTCTT 14158532 Query 47267 taattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAAT 47326 | |||| ||| | | | || || || | | | |||| | ||||| | Sbjct 14158533 CATGTCATCGTCCCACAAATCCAGCTCCGTCAAGTCCCTCAGCAAATGATGGTTAACCAC 14158592 Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386 ||| || || || || ||||| | | | |||| ||||| |||| || || || | || Sbjct 14158593 TTGGAACTCCCCGGAGAGTACGCGTCTGGTATAAATATTTGTTGTGTAGGGCTCGAAGGA 14158652 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 || || || || | ||| |||||||| |||||||| ||||| | ||||| |||| | Sbjct 14158653 CTCGTTGTTACCCATAATCTGAGCAGTCGATGCTGTGGGCATCGGAGCAACCAATAGGGA 14158712 Query 47447 ATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGA 47506 ||||| ||||||| | || || |||||| ||||| ||| | | Sbjct 14158713 GTTTCTGACTCCATGCTGTTTGATAGACTCCTTCAGAGATTTCCAGTCCCAGAGACCAGT 14158772 Query 47507 TGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATA 47566 || || ||| | || || || |||||||| ||||||| || || | ||| Sbjct 14158773 CGGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTTACTGGGCTTCCTTCATA 14158832 Query 47567 TGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626 |||| ||||| |||| | || || ||||| ||||| || |||| || | | | || Sbjct 14158833 AGTTTCATAAGTTCCGTCTTTTTGGGCCAGTTCGCAACTGGCCTCCAGGGCTCCAAAGTA 14158892 Query 47627 TATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNN 47686 ||||||||||| || | | ||| | ||||| || ||| | ||||| Sbjct 14158893 GATTGTTTCAAAAATCTGTTGGTTCAAGAGGCTTGCCTCCTCGCTTTCGTAGGGATAACG 14158952 Query 47687 NNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTT 47746 | | || |||| ||| |||||||| || || || || | ||| | | Sbjct 14158953 CATAAGAATCAGCGCGTCAGCCAGTCCCTGAACACCGATTCCGATAGGACGATGCCTCAT 14159012 Query 47747 ATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANN 47806 ||| || || || || || | ||||| ||| |||||||| || ||||| || Sbjct 14159013 ATTGGACTTCTTGGCCTCCGGCAGCGGATAAAAGTTGATATCTATTATCTTATTGAGGTT 14159072 Query 47807 NNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTATA-- 47864 | || ||| || || || ||| | | || | | Sbjct 14159073 TCTGGCCACCGTCTTTGTGACCTCCTTTAGCTTTTTGAAGTCATATGTCTTCTCGGGAGT 14159132 Query 47865 -ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 |||||| | || || || || || || | ||| || || || | ||| | || || Sbjct 14159133 CACAAACATGTTGAGAGCGATGGAGGCCAAATTGCAAACTGCAATCTCGTCAGGTGAAGA 14159192 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 ||| | | ||||| | || ||||| | || || || || |||| ||| || || || Sbjct 14159193 ATACTCAACAATTTCCGTGCACAGATTGCTGCACTTAATGGTGCCCACATTCTGTTGGTT 14159252 Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 | ||| || ||||||||| | ||||| |||| ||||||| || | || || Sbjct 14159253 GCTCTTTCGGTTGCAGGCGTCCTTGAACAGCATGTAAGGATTTCCAGTCTCCACTTGCGA 14159312 Query 48044 TTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTA---GCTTTATTATC 48100 |||||||||| ||| | || || |||| |||| || | || || Sbjct 14159313 CTCAATGATAGCAAACCACA-AGGACTGTGCTTTC--ACAGTTCGATTGGCGCGTCCCTC 14159369 Query 48101 ATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGG 48160 ||||||||||| ||| | || ||||| ||||| || |||||| || | ||||| Sbjct 14159370 CTGTTCGTATTTCACATAGAGTTTTTCAAACTCATCGCCCCACACATCATGGAGGCCAGG 14159429 Query 48161 ACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATAT 48220 |||| || |||||||| || ||||| ||||||| | |||| |||| || | Sbjct 14159430 GCATTTATGGGGACACATTAACGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAAGAG 14159489 Query 48221 ATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTAT 48279 |||||||||||| || || ||| || ||||| | | || | ||||| |||||| ||| Sbjct 14159490 ATCTGGTATCCACAGGGC-ATAGAACAAATCGCGGGCTCGATGCTCTTCCTTGCCAGTAT 14159548 Query 48280 TCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCA 48339 || | ||||| || ||||| || | || ||| | |||||| || || | ||| || || | Sbjct 14159549 TCTTCTTAAGGTCCAGAAACTCAAATACATCCGAATGCCAGGGCTCCAGATAAATGGCAA 14159608 Query 48340 TTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTC 48399 | || || || || ||| || ||||| | ||| | || |||||| | |||| Sbjct 14159609 AGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATACCGCGCCACGTTGTTAAAGACTC 14159668 Query 48400 TTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAAT 48445 | | ||| || || | ||||| ||| | ||||| ||||| |||| Sbjct 14159669 TCAGCATAGGAACCAGGCCATTGGATGTGCCATTCGTTCCGCAAAT 14159714 >seq13747 Length=19884421 Score = 113 bits (124), Expect = 5e-20 Identities = 518/812 (64%), Gaps = 10/812 (1%) Strand=Plus/Plus Query 18691 TTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCATAAAATCAAATGGATT 18749 ||||||||||| || || || || || | || || ||| ||||| |||| || || || Sbjct 8706166 TTTTCAAAGAAGTTGGTCTTCCCGTCCAGCGAGAT-CATCTCCATGAAATTGAAAGGGTT 8706224 Query 18750 TTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTT 18809 ||| || || ||||| | || | |||| ||||| | ||||| ||||||| Sbjct 8706225 TTTGGTGTTGTAGATTTTGCCTACGCCCAGCTCTACCAGTAGCCGGTCCGCCACAAATTC 8706284 Query 18810 AATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGT 18869 || ||| ||||| || || ||||| || || || || || || | || || || Sbjct 8706285 GATGTATTGCGACATCAAGTCGCAGTTCATGCCGATCAAATTCACGGGCAAGGCGTCGGT 8706344 Query 18870 AAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA--GATACAACTCTATCTTCA 18927 || || || || || || | || || || ||||| ||| | || | | Sbjct 8706345 GAGGAACTCCTGCTCAATGTCCACAGCATCGCGGATAATCTCGATGATGCGCTCGCGACG 8706404 Query 18928 TTAGGAGGGTATAGAAGATGTTTAAACATCAA-ACATGCAAAATCACAATGTAGTCCCTC 18986 | || | | || || | ||||| | ||| || || || || || || || || Sbjct 8706405 T--GGTTTCTGGACGAGGTGCTGGAACATAAGCACA-GCGAAGTCGCAGTGCAGACCTTC 8706461 Query 18987 GTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAA 19046 ||| || || | || || || || || | ||| ||||||| |||| || || || Sbjct 8706462 GTCCCTGGAGATAAGCTCGTTGGAGAAGGTCAGACCGGGCATCAAACCTCGCTTCTTCAA 8706521 Query 19047 CCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAAC 19106 |||||| ||||| ||||| || ||||||||||| || || || ||||| || | Sbjct 8706522 CCAGAAGATAGAGGCAAAGCTGCCGCTGAAGAATATACCCTCCACGGCAGCAAATGCGAT 8706581 Query 19107 TAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTT 19166 | | || ||| | | || || | |||||| ||| |||||||| ||||| Sbjct 8706582 GATGCGCTCCCCAAAGTTGGCTGACTTCGAAGAAATCCAGGCCAGAGCCCAATCTGCCTT 8706641 Query 19167 CTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATC 19226 || || ||||| ||||| || | ||| || || || ||||| | | ||| Sbjct 8706642 GCGCTTCACCGCAGGCATCGTCTCAATGGCATTGAACAGGTATTCACGCTGGTGGGGATC 8706701 Query 19227 TTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCAT 19286 | || || | ||| || | | ||||||||| || || || | ||||| || || || Sbjct 8706702 TCGAATGTAAGTATCGATGAGCACACTGTACATCTCAGAGTGCACGTTTTCCATGGCGAT 8706761 Query 19287 CTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGAC 19346 || || ||||| ||||| | || || || | ||| || || || || | || || Sbjct 8706762 TTGGAAACCGTAGAAACAGCGCGCCTCCGTGACCTGAACCTCCTGACTGAAGCGCTCCAC 8706821 Query 19347 CAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAA 19406 || || || || || |||||||| ||| ||||| || || | || || || || Sbjct 8706822 CAGGTTCTCGTTCACAATTCCATCCGAAGCAGCAAAGAAGGCCAGCACGTGGGAGATGAA 8706881 Query 19407 ATGTTTTTCATCTGAGGTTAATG-TATTCCAATCATTAATATCTTTAGATAAATCTACTT 19465 || ||| || | |||| | || |||||| | | ||| || || | || || | Sbjct 8706882 GTGGCGTTCGTC-GTCCTTAAGGCGATGCCAATCGGTGAGATCCTTCGAGAGGTCCACCT 8706940 Query 19466 CTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 | || || ||||| ||||| || || || ||| Sbjct 8706941 CCTCGACAGTCCAGAAAGAGGCTTCAGCCTTT 8706972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562012194576360