Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq13748 104 2e-17 seq3328 104 2e-17 seq3735 89.7 4e-13 >seq13748 Length=23293914 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | || || || ||||| || || || || |||||||| || | Sbjct 9536537 CCGCCTCGCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGAC 9536478 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || || || ||||||||||| || || || || Sbjct 9536477 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 9536418 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || |||||||| || || || | || | || ||||| | ||||| Sbjct 9536417 ATTCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAGGGCTCCACC 9536358 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| ||||| || || || ||||| ||||| |||||||| Sbjct 9536357 TCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 9536311 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | || || || ||||| || || || || |||||||| || | Sbjct 9536765 CCGCCTCGCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGAC 9536706 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || || || ||||||||||| || || || || Sbjct 9536705 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 9536646 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || |||||||| || || || | || | || ||||| | ||||| Sbjct 9536645 ATTCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAGGGCTCCACC 9536586 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || ||||| || || ||||| || |||||||| Sbjct 9536585 TCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTTACGAAGATCTGCAT 9536539 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| || | | || | | |||| || Sbjct 9537203 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGGCCATCCTCG 9537144 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| || || || || || || || || || || Sbjct 9537143 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 9537084 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || | || | ||||| || | ||||| || || |||| ||||| Sbjct 9537083 ATCTTGGCTTTGACGTTCTCAATGGTGTCGGAGGGCTCCACCTCCAGGGTGATGGTTTTT 9537024 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || || |||||||| Sbjct 9537023 CCAGTCAAGGTTTTCACGAAGATCTGCAT 9536995 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| ||||| || || || ||||| || | | || | | |||| || Sbjct 9538115 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGGCCATCCTCG 9538056 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| || || || || || || || || ||||| Sbjct 9538055 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGG 9537996 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || || || || |||| ||||| Sbjct 9537995 ATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCAACCTCCAGGGTGATGGTTTTT 9537936 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || ||||| || |||||||| Sbjct 9537935 CCGGTCAAGGTCTTTACGAAGATCTGCAT 9537907 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | || ||||| || || || || || || || ||||| || | Sbjct 9538819 TTCCTCCGCGCAGACGGAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 9538760 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | |||| || | ||||| || || || ||||||||||| || || || | Sbjct 9538759 ACAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGG 9538700 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || || || || || ||||| || || || | || | ||||| || | || | Sbjct 9538699 GGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTGTCGGAGGGCTCAA 9538640 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| || |||| || || ||||| || || ||||| || |||||||| Sbjct 9538639 CTTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTTACGAAGATCTGCAT 9538591 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| || | | ||||| | |||| || Sbjct 9537887 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGAGTTCGGCCATCCTCG 9537828 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| || || || || || || || || || || Sbjct 9537827 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 9537768 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || || || || |||| || || Sbjct 9537767 ATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCAACCTCCAGGGTGATGGTCTTT 9537708 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || ||||| || |||||||| Sbjct 9537707 CCGGTCAAGGTCTTTACGAAGATCTGCAT 9537679 >seq3328 Length=1182 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| | || || || ||||| || || || || |||||||| || | Sbjct 681 CCTCCTCGCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGAC 622 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | |||| || | ||||| || || || ||||||||||| || || || || Sbjct 621 AGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 562 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || ||||| || || || | || | || || || | || ||| Sbjct 561 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCAACT 502 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || ||||| || || ||||| || |||||||| Sbjct 501 TCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTTACGAAGATCTGCAT 455 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| || | | ||||| | |||| || Sbjct 435 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGAGTTCGGCCATCCTCG 376 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| || || || || || || || || ||||| Sbjct 375 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGG 316 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || | || ||||| || |||| || || Sbjct 315 ATCTTGGCCTTCACGTTCTCGATGGTGTCGGAGGGCTCAACTTCCAGGGTGATGGTCTTT 256 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || || || |||||||| Sbjct 255 CCGGTCAAGGTCTTCACGAAGATCTGCAT 227 >seq3735 Length=1215 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| ||||| || || || ||||| || | | || | | |||| || Sbjct 379 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCG 320 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| || || || || || || || || ||||| Sbjct 319 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGG 260 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || || || || |||| || || Sbjct 259 ATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCAACCTCCAGGGTGATGGTCTTT 200 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || ||||| || |||||||| Sbjct 199 CCGGTCAAGGTCTTTACGAAGATCTGCAT 171 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| | || || || ||||| || || || || || ||||| || | Sbjct 625 CCTCCTCGCAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 566 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || || || ||||||||||| || || || || Sbjct 565 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 506 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || ||||| || || || || | || | ||||| || | || ||| Sbjct 505 ATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGGAGGGCTCAACT 446 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || ||||| || || || || || |||||||| Sbjct 445 TCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 399 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAAT-CGGCGATAGTTCTGGCATCGTC 101319 || || |||||||| ||||| ||||| ||||| |||| | | | || | | |||| || Sbjct 1064 ACCAAGTGAAGGGTGGATTCCTTTTGGATATTTTAATTCCGACAGGGTGCGGCCATCCTC 1005 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | ||||| || || || ||||||||||| || || || || || || || || || || Sbjct 1004 GAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGTTCTGGGGGGATTCCCTCCTTGTCCTG 945 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || || || | || | || || || | || || || || |||| ||||| Sbjct 944 GATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCAACCTCCAGGGTGATGGTTTT 885 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || || || |||||||| Sbjct 884 TCCGGTCAAGGTCTTCACGAAGATCTGCAT 855 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| || | | || | | |||| || Sbjct 835 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGGCCATCCTCG 776 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| || || || || || || || || ||||| Sbjct 775 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGG 716 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || || || || |||| || || Sbjct 715 ATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCAACCTCCAGGGTGATGGTCTTT 656 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || ||||| || |||||||| Sbjct 655 CCGGTCAAGGTCTTTACGAAGATCTGCAT 627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396211997238393