Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq13747 197 3e-45 seq13746 127 4e-24 >seq13747 Length=19884421 Score = 197 bits (218), Expect = 3e-45 Identities = 483/733 (66%), Gaps = 15/733 (2%) Strand=Plus/Minus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| |||| |||||||| || || ||||| || ||||||||||| ||| ||| | | Sbjct 8706871 ACGTGCTGGCCTTCTTTGCTGCTTCGGATGGAATTGTGAACGAGAACCTGGTGGAGCGCT 8706812 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| ||| || ||| | |||||| ||||||||||||||||| || ||||| | Sbjct 8706811 TCAGTCAGGAGGTTCAGGTCACGGAGGCGCGCTGTTTCTACGGTTTCCAAATCGCCATGG 8706752 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCGCC 25773 |||| |||||||||||| |||| ||| | ||| || |||||| ||| | | Sbjct 8706751 AAAACGTGCACTCTGAGATGTACAGTGTGCTCATCGAT-ACTTACATTCGAGATCCCCAC 8706693 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 || | || ||||| |||||| ||| || || | ||| | ||||| Sbjct 8706692 CAGCGTGAATACCTGTTCAATGCCATTGAGACGATGCCTGCGGTGAAGCGCAAGGCAGAT 8706633 Query 25834 TGGGCCATGAAGTGGA--TCAAC--AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| || |||| || | || || || | ||||| ||||| | | || Sbjct 8706632 TGGGCTCTGGCCTGGATTTCTTCGAAGTCA----GCCAACTTTGGGGAGCGCATCATCGC 8706577 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 |||||||| |||||||| || || |||||||| ||||| | ||||||||| | || Sbjct 8706576 ATTTGCTGCCGTGGAGGGTATATTCTTCAGCGGCAGCTTTGCCTCTATCTTCTGGTTGAA 8706517 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||||| ||| ||| ||||||||||| ||| ||||||||| || Sbjct 8706516 GAAGCGAGGTTTGATGCCCGGTCTGACCTTCTCCAACGAGCTTATCTCCAGGGACGAAGG 8706457 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 ||| ||| | || || || || | | | | ||| | |||| ||||| || Sbjct 8706456 TCTGCACTGCGACTTCGCTGTGCTTATGTTCCAG---CACCTCGTCCAGAAACCACGTCG 8706400 Query 26070 AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 ||| | || | || ||| || |||||||| || ||| ||||||| | Sbjct 8706399 CGAGCGCATCATCGAGATTATCCGCGATGCTGTGGACATTGAGCAGGAGTTCCTCACCGA 8706340 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC-TCATGAGCCAATACATTGAGT 26188 | ||||||||| | ||| | ||| |||||||| || | Sbjct 8706339 CGCCTTGCCCGTGAATTTGATCGGCATGAACTGC-GACTTGATGTCGCAATACATCGAAT 8706281 Query 26189 ATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACC 26248 |||||| |||| || ||| ||||||| | | || | |||||| || |||| Sbjct 8706280 TTGTGGCGGACCGGCTACTGGTAGAGCTGGGCGTAGGCAAAATCTACAACACCAAAAACC 8706221 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 | ||| | || ||||| | || ||| |||| ||||||||||||||||||||||||| || Sbjct 8706220 CTTTCAATTTCATGGAGATGATCTCGCTGGACGGGAAGACCAACTTCTTTGAAAAGAAGG 8706161 Query 26309 TCGGCGACTATCA 26321 | || || || || Sbjct 8706160 TGGGAGAGTACCA 8706148 >seq13746 Length=16180835 Score = 127 bits (140), Expect = 4e-24 Identities = 540/844 (64%), Gaps = 17/844 (2%) Strand=Plus/Plus Query 221689 CACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTG-- 221746 |||||| ||| || || | | ||||| || || || || | |||||| | || Sbjct 14159133 CACAAACATGTTGAGAGCGATGGAGGCCAAATTGCAAACTGCAATCTCGTCA--GGTGAA 14159190 Query 221747 GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGA 221806 | ||||| | || || || || || ||||||||||| ||||| |||| | | || Sbjct 14159191 GAATACTCAACAATTTCCGTGCACAGATTGCTGCACTTAATGGTGCCCACATTCTGTTGG 14159250 Query 221807 TTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGA 221866 || ||| || ||| ||||||||| | ||||| | ||| |||||||||| || Sbjct 14159251 TTGCTCTTTCGGTTGCAGGCGTCCTTGAACAGCATGTAAGGATTTCCAGTCTCCACTTGC 14159310 Query 221867 GCCACCAGAATCTTGTCCCAGA-GTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTC 221925 | | | | || ||| | | || || | |||| || | ||| | ||||| Sbjct 14159311 GACTCAATGATAGCAAACCACAAGGACTGTG-CTTTCACAGTTCGATTGGCGCGTCCCTC 14159369 Query 221926 GGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCC 221985 || ||| || |||||| | ||||||| || || || | || | ||||| Sbjct 14159370 ---CTGTTCGTATTTCACATAGAGTTTTTCAAACTCATCGCCCCACACATCATGGAGGCC 14159426 Query 221986 TGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAA 222045 || || | ||||||||| | ||||| || ||| | | || | | |||||| Sbjct 14159427 AGGGCATTTATGGGGACACATTAACGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAA 14159486 Query 222046 GAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTT 222105 ||| || || |||||||| || | || | ||| | || || ||||| ||| ||| | Sbjct 14159487 GAGATCTGGTATCCACAGGGCATAGAACAAATCGCGGGCTCGATGCTCTTCCTTGCCAGT 14159546 Query 222106 GTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGC 222165 || ||| | || |||| ||||||||| | || | ||||| ||||||||||| | ||| Sbjct 14159547 ATTCTTCTTAAGGTCCAGAAACTCAAATACATCCGAATGCCAGGGCTCCAGATAAATGGC 14159606 Query 222166 CAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGAT 222225 | || || || |||||| |||||||||||||| || | ||| ||| |||| Sbjct 14159607 AAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATACCGCGCCACGTTGTTAAAGAC 14159666 Query 222226 GCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCC 222285 | || | || ||||| || |||||| || || || || ||| | | ||| Sbjct 14159667 TCTCAGCATAGGAACCAGGCCATTGGATGTGCCATTCGTTCCGCAAATCGAGGTACCCTT 14159726 Query 222286 GGCCCTCAGGTTACTGGCAGACATG-CCGATACCACCGGCGTGTTTCGAGATCATGGCGC 222344 || | | | | ||| | | | || |||||||| || || ||||||||||||| Sbjct 14159727 TGCACGAATG-CAATGGACGTTAAGACCAATACCACCAGCAGACTTGGAGATCATGGCGC 14159785 Query 222345 AGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAAC 222404 | || | | | | ||| ||||| || ||||| | | | | |||| || |||| Sbjct 14159786 ATTGCTCAACCGATTTGAAGATACCCTCGATGGAGTCGGCAGTCATGGTCAGGAGGAAAC 14159845 Query 222405 AAGACGACATCT---GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTG 222461 | ||||||| || || || |||| | ||| ||| || || || ||||| | Sbjct 14159846 AGGACGACAGCTGGGGACGATTCGTGGCA---GCGGCAAAAAGTGTTGGCGAAGCGTGAG 14159902 Query 222462 TAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGT 222521 | || || | | |||| || | ||||||||| ||| | |||||| || || | Sbjct 14159903 TGAAATAACGCTCGGACAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTCCAT 14159962 Query 222522 GAAT 222525 |||| Sbjct 14159963 GAAT 14159966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928685166410560