Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30]
13,749 sequences; 230,993,012 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq13747 197 3e-45
seq13746 127 4e-24
>seq13747
Length=19884421
Score = 197 bits (218), Expect = 3e-45
Identities = 483/733 (66%), Gaps = 15/733 (2%)
Strand=Plus/Minus
Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654
||||| |||| |||||||| || || ||||| || ||||||||||| ||| ||| | |
Sbjct 8706871 ACGTGCTGGCCTTCTTTGCTGCTTCGGATGGAATTGTGAACGAGAACCTGGTGGAGCGCT 8706812
Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714
||| ||| || ||| | |||||| ||||||||||||||||| || ||||| |
Sbjct 8706811 TCAGTCAGGAGGTTCAGGTCACGGAGGCGCGCTGTTTCTACGGTTTCCAAATCGCCATGG 8706752
Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCGCC 25773
|||| |||||||||||| |||| ||| | ||| || |||||| ||| | |
Sbjct 8706751 AAAACGTGCACTCTGAGATGTACAGTGTGCTCATCGAT-ACTTACATTCGAGATCCCCAC 8706693
Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833
|| | || ||||| |||||| ||| || || | ||| | |||||
Sbjct 8706692 CAGCGTGAATACCTGTTCAATGCCATTGAGACGATGCCTGCGGTGAAGCGCAAGGCAGAT 8706633
Query 25834 TGGGCCATGAAGTGGA--TCAAC--AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889
||||| || |||| || | || || || | ||||| ||||| | | ||
Sbjct 8706632 TGGGCTCTGGCCTGGATTTCTTCGAAGTCA----GCCAACTTTGGGGAGCGCATCATCGC 8706577
Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949
|||||||| |||||||| || || |||||||| ||||| | ||||||||| | ||
Sbjct 8706576 ATTTGCTGCCGTGGAGGGTATATTCTTCAGCGGCAGCTTTGCCTCTATCTTCTGGTTGAA 8706517
Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009
| || || |||||||| ||| ||| ||||||||||| ||| ||||||||| ||
Sbjct 8706516 GAAGCGAGGTTTGATGCCCGGTCTGACCTTCTCCAACGAGCTTATCTCCAGGGACGAAGG 8706457
Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069
||| ||| | || || || || | | | | ||| | |||| ||||| ||
Sbjct 8706456 TCTGCACTGCGACTTCGCTGTGCTTATGTTCCAG---CACCTCGTCCAGAAACCACGTCG 8706400
Query 26070 AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129
||| | || | || ||| || |||||||| || ||| ||||||| |
Sbjct 8706399 CGAGCGCATCATCGAGATTATCCGCGATGCTGTGGACATTGAGCAGGAGTTCCTCACCGA 8706340
Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC-TCATGAGCCAATACATTGAGT 26188
| ||||||||| | ||| | ||| |||||||| || |
Sbjct 8706339 CGCCTTGCCCGTGAATTTGATCGGCATGAACTGC-GACTTGATGTCGCAATACATCGAAT 8706281
Query 26189 ATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACC 26248
|||||| |||| || ||| ||||||| | | || | |||||| || ||||
Sbjct 8706280 TTGTGGCGGACCGGCTACTGGTAGAGCTGGGCGTAGGCAAAATCTACAACACCAAAAACC 8706221
Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308
| ||| | || ||||| | || ||| |||| ||||||||||||||||||||||||| ||
Sbjct 8706220 CTTTCAATTTCATGGAGATGATCTCGCTGGACGGGAAGACCAACTTCTTTGAAAAGAAGG 8706161
Query 26309 TCGGCGACTATCA 26321
| || || || ||
Sbjct 8706160 TGGGAGAGTACCA 8706148
>seq13746
Length=16180835
Score = 127 bits (140), Expect = 4e-24
Identities = 540/844 (64%), Gaps = 17/844 (2%)
Strand=Plus/Plus
Query 221689 CACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTG-- 221746
|||||| ||| || || | | ||||| || || || || | |||||| | ||
Sbjct 14159133 CACAAACATGTTGAGAGCGATGGAGGCCAAATTGCAAACTGCAATCTCGTCA--GGTGAA 14159190
Query 221747 GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGA 221806
| ||||| | || || || || || ||||||||||| ||||| |||| | | ||
Sbjct 14159191 GAATACTCAACAATTTCCGTGCACAGATTGCTGCACTTAATGGTGCCCACATTCTGTTGG 14159250
Query 221807 TTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGA 221866
|| ||| || ||| ||||||||| | ||||| | ||| |||||||||| ||
Sbjct 14159251 TTGCTCTTTCGGTTGCAGGCGTCCTTGAACAGCATGTAAGGATTTCCAGTCTCCACTTGC 14159310
Query 221867 GCCACCAGAATCTTGTCCCAGA-GTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTC 221925
| | | | || ||| | | || || | |||| || | ||| | |||||
Sbjct 14159311 GACTCAATGATAGCAAACCACAAGGACTGTG-CTTTCACAGTTCGATTGGCGCGTCCCTC 14159369
Query 221926 GGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCC 221985
|| ||| || |||||| | ||||||| || || || | || | |||||
Sbjct 14159370 ---CTGTTCGTATTTCACATAGAGTTTTTCAAACTCATCGCCCCACACATCATGGAGGCC 14159426
Query 221986 TGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAA 222045
|| || | ||||||||| | ||||| || ||| | | || | | ||||||
Sbjct 14159427 AGGGCATTTATGGGGACACATTAACGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAA 14159486
Query 222046 GAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTT 222105
||| || || |||||||| || | || | ||| | || || ||||| ||| ||| |
Sbjct 14159487 GAGATCTGGTATCCACAGGGCATAGAACAAATCGCGGGCTCGATGCTCTTCCTTGCCAGT 14159546
Query 222106 GTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGC 222165
|| ||| | || |||| ||||||||| | || | ||||| ||||||||||| | |||
Sbjct 14159547 ATTCTTCTTAAGGTCCAGAAACTCAAATACATCCGAATGCCAGGGCTCCAGATAAATGGC 14159606
Query 222166 CAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGAT 222225
| || || || |||||| |||||||||||||| || | ||| ||| ||||
Sbjct 14159607 AAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATACCGCGCCACGTTGTTAAAGAC 14159666
Query 222226 GCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCC 222285
| || | || ||||| || |||||| || || || || ||| | | |||
Sbjct 14159667 TCTCAGCATAGGAACCAGGCCATTGGATGTGCCATTCGTTCCGCAAATCGAGGTACCCTT 14159726
Query 222286 GGCCCTCAGGTTACTGGCAGACATG-CCGATACCACCGGCGTGTTTCGAGATCATGGCGC 222344
|| | | | | ||| | | | || |||||||| || || |||||||||||||
Sbjct 14159727 TGCACGAATG-CAATGGACGTTAAGACCAATACCACCAGCAGACTTGGAGATCATGGCGC 14159785
Query 222345 AGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAAC 222404
| || | | | | ||| ||||| || ||||| | | | | |||| || ||||
Sbjct 14159786 ATTGCTCAACCGATTTGAAGATACCCTCGATGGAGTCGGCAGTCATGGTCAGGAGGAAAC 14159845
Query 222405 AAGACGACATCT---GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTG 222461
| ||||||| || || || |||| | ||| ||| || || || ||||| |
Sbjct 14159846 AGGACGACAGCTGGGGACGATTCGTGGCA---GCGGCAAAAAGTGTTGGCGAAGCGTGAG 14159902
Query 222462 TAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGT 222521
| || || | | |||| || | ||||||||| ||| | |||||| || || |
Sbjct 14159903 TGAAATAACGCTCGGACAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTCCAT 14159962
Query 222522 GAAT 222525
||||
Sbjct 14159963 GAAT 14159966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928685166410560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |