Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq13737 170 1e-36 seq13749 116 2e-20 seq13746 111 1e-18 >seq13737 Length=3535662 Score = 170 bits (188), Expect = 1e-36 Identities = 373/548 (68%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| ||||| | || | || |||| || || | Sbjct 184729 TTGGTATTGATTTGGGCACCACCTACTCCTGTGTGGGCGTGTTCCAGCATGGCAAGGTTG 184670 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||| ||||| |||||| | || |||||||| |||||| | || || || | Sbjct 184669 AGATCATTGCCAACGACCAGGGTAATCGTACCACACCATCCTATGTTGCCTTCACCGAGA 184610 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || || |||||||| || | || | || || || | || | Sbjct 184609 CGGAGCGTCTGATCGGCGATGCTGCCAAGAACCAGGTGGCGATGAACCCGACCCAGACGA 184550 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || |||||||| | | |||||||| || || || ||| | |||| || || || | Sbjct 184549 TCTTCGATGCTAAGCGTCTCATTGGTCGCAAGTTCGACGATTCTGCTGTGCAGTCCGACA 184490 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-CA-AT 474630 || || ||||| || |||| | | |||| || || || | || || | || | Sbjct 184489 TGAAGCACTGGCCCTTCGAGGTTGTCAGCGTTGACGGCAAGCCCAAGATCGAGGTCACCT 184430 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| | |||| Sbjct 184429 ACAAGGATGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCTATGGTCCTCACCAA 184372 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | |||| |||| | |||| ||| ||||| || || |||| || || ||| Sbjct 184371 GATGAAGGAGACCGCCGAG-GCCTATC-TGGGCAAGACTGTGACCAATGCCGTCATCACT 184314 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || || || ||||| ||||| || || || || || || | ||||| Sbjct 184313 GTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACGCCGGTACCATTGCC 184254 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || | |||||| | ||||| || || || || || || || || ||||||| ||||| Sbjct 184253 GGATTGAATGTTCTGCGTATCATCAACGAGCCCACGGCCGCTGCTATTGCTTACGGTCTG 184194 Query 474869 GATAAGAA 474876 || ||||| Sbjct 184193 GACAAGAA 184186 >seq13749 Length=23697760 Score = 116 bits (128), Expect = 2e-20 Identities = 256/381 (67%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 |||||||||||||| || || |||||||| || | || ||||| ||| | || || | | Sbjct 7675404 AATCCTGATGAAGCGGTGGCCTATGGAGCGGCAATTCAGGCAGCCATTCTTTCCGG-CGA 7675462 Query 475853 TCAGACGAG-AAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCT 475911 | ||| || | |||| || | | || || || || |||| || ||||| || | Sbjct 7675463 TGAGAGCAGCCAGATAAAGGATGTCTTGCTGGTGGATGTGGCTCCGCTATCATTGGGCAT 7675522 Query 475912 TGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA 475971 || || | || || | ||||| || || ||||| | || | | || || ||||| Sbjct 7675523 CGAGACTGCCGGCGGAGTGATGACCAAGCTGATTGAGCGCAACAGCCGCATTCCTTGCAA 7675582 Query 475972 AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTT 476031 | || || || |||| || | ||||||||| | | ||||| ||||| |||| Sbjct 7675583 GCAGTCCAAGACCTTCACCACATACGCAGATAATCAACCTGCGGTAACTATCCAGGTCTT 7675642 Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 || || || | || ||||| || || || ||||| || || || || || Sbjct 7675643 CGAGGGAGAGCGTGCCTTGACTAAGGACAACAATGTGCTTGGCACATTCAACCTGACTGG 7675702 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || || ||||| |||||||| || || ||||||| || || || || | || || || Sbjct 7675703 CATCCCACCTGCACCCAGAGGCGTGCCAAAAATTGACGTCACCTTCGACTTGGACGCTAA 7675762 Query 476152 TGGTATTCTTAATGTTACTGC 476172 |||||| || |||||||| || Sbjct 7675763 TGGTATCCTGAATGTTACCGC 7675783 >seq13746 Length=16180835 Score = 111 bits (122), Expect = 1e-18 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || | |||||| || ||||| ||||| || || ||||| || Sbjct 14254396 TTATAGTCAGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC 14254337 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||||||||| ||||| |||||||| ||||||| ||| || ||||| Sbjct 14254336 TGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCC 14254277 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || || || ||||| ||||||||||| || || Sbjct 14254276 GACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 14254221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267589438679852