Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq13746 163 6e-35 seq13748 138 2e-27 seq13745 134 3e-26 seq13747 114 3e-20 >seq13746 Length=16180835 Score = 163 bits (180), Expect = 6e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || ||||||| ||||| || ||||| || ||||| ||||| || | | ||| Sbjct 14254432 CGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGACCA 14254373 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||| ||||| || | || ||||||||||| |||||||| || Sbjct 14254372 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 14254313 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| ||||| |||||||| || ||||| ||||| || || | ||| || Sbjct 14254312 TCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 14254253 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 14254252 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 14254218 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | |||||||| || || ||||| || || || || | Sbjct 2088095 TACCACCGCGCAGACGGAGCACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 2088036 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| || || || || || || || ||||| || | || |||||||||| Sbjct 2088035 AAAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAG 2087976 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || || || ||||| || || ||||| || || || || || || | Sbjct 2087975 GGATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCCGACGGCTCGA 2087916 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | || || || || || ||||| Sbjct 2087915 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 2087867 >seq13748 Length=23293914 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || ||| || || ||||| || || || || ||||| ||||| || || | Sbjct 9536767 TACCGCCTCGCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCG 9536708 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || ||||| || ||||| | | || || ||||| | Sbjct 9536707 ACAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGG 9536648 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| ||||||||||| || || || || || || |||||| || || | Sbjct 9536647 GGATTCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAGGGCTCCA 9536588 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||| || ||||| |||||||| || |||||||| Sbjct 9536587 CCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTTACGAAGATCTGCAT 9536539 Score = 132 bits (146), Expect = 9e-26 Identities = 176/243 (72%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || ||| || || ||||| || || || || ||||| ||||| || || | Sbjct 9536539 TACCGCCTCGCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCG 9536480 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || ||||| || ||||| | | || || ||||| | Sbjct 9536479 ACAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGG 9536420 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| ||||||||||| || || || || || || |||||| || || | Sbjct 9536419 GGATTCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAGGGCTCCA 9536360 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821 | |||| || || || || || ||||| || || ||||| ||||||||| || ||| | Sbjct 9536359 CCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATT-TTGGATTAT 9536301 Query 82822 TCT 82824 ||| Sbjct 9536300 TCT 9536298 >seq13745 Length=6960332 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || ||| || || ||||| || || || || ||||| || || || || || Sbjct 841367 CCTCCACGCAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 841426 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || || ||||| || | || ||||||||||| Sbjct 841427 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGG 841486 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| ||||| || || || || || Sbjct 841487 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGAGGGCTCGACC 841546 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || |||||||| |||| ||||| || || |||||||| Sbjct 841547 TCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 841593 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||||| ||| || |||| ||| || || ||||| || || || || || Sbjct 840911 CCGCCGCGCAGACGCAAAACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 840970 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || || ||||| || | || ||||||||||| Sbjct 840971 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGG 841030 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || || ||||| || || ||||| ||||| || || || || || Sbjct 841031 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCGGATGGCTCGACC 841090 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| || | ||||| || || |||||||| Sbjct 841091 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 841137 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || ||||| || || || || || || | | ||| Sbjct 841151 CGGAGTACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCG 841210 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || ||||||||||| ||||| ||||| Sbjct 841211 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTG 841270 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| ||||| || || || || || |||| || || Sbjct 841271 TCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCGGAGGGCTCGACCTCCAGGGTGATG 841330 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 841331 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 841365 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || ||||| || || || || || || | | ||| Sbjct 842063 CGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCG 842122 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || ||||||||||| || || ||||| Sbjct 842123 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCCTCCTTG 842182 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| ||||| || || || || || |||| || || Sbjct 842183 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGAGGGCTCGACCTCCAGGGTGATG 842242 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 842243 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 842277 >seq13747 Length=19884421 Score = 114 bits (126), Expect = 3e-20 Identities = 202/289 (70%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 198339 CTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGA 198398 || |||||| | | ||| | || || || | || || || ||||| | || | | Sbjct 16052057 CTGTGGAATTCGGCCCAATTGCAACTGGTACGTGAGGGCAAGATGCACGGCTTCCTGCGC 16052116 Query 198399 ATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTT-GAGTTA 198457 |||||||||||||| ||||| || ||||||||| || || || | || | |||| Sbjct 16052117 ATGTACTGGGCTAAGAAGATCCTCGAATGGACAGAGACTCCCGAGCAGGCCCTAGAGTAC 16052176 Query 198458 TAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTAG 198516 |||| || || |||||||| || ||||| ||| || || || |||||||| | Sbjct 16052177 GCCATTCTA-CTTAATGATAAGTACAGCCTGGACGG-ACGAGACCCCAATGGATACGTGG 16052234 Query 198517 GTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTG 198576 | |||||||||||||| | ||| | ||||| | ||||| ||| || |||| |||| Sbjct 16052235 GGTGTATGTGGTCTATCGGAGGAGTCCATGACATGGGCTGGAAGGAACGATCTATCTTTG 16052294 Query 198577 GGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGT 198625 |||||||| | || ||||||||| | || | | | ||||| ||||| Sbjct 16052295 GGAAGATACGCTACATGAATTATCAAGGCTGTCGGCGTAAATTCGATGT 16052343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981654242240911