Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq13747 145 1e-28 seq13745 114 2e-19 seq13748 87.8 3e-11 >seq13747 Length=19884421 Score = 145 bits (160), Expect = 1e-28 Identities = 331/488 (68%), Gaps = 14/488 (3%) Strand=Plus/Minus Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTC-C 1455852 |||||| || ||||| || ||||| | ||||||||| |||||| ||| | | || | Sbjct 8706972 AAAGGCTGAAGCCTCTTTCTGGACTGTCGAGGAGGTGGACCTCT----CGA-AGGATCTC 8706918 Query 1455853 ACTGGGTG---TCGC-TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTT 1455908 || | || |||| | | |||||||| ||||| |||||| ||||| || ||||| Sbjct 8706917 ACCGATTGGCATCGCCTTAAGGACGACGAACGCCACTTCATCTCCCACGTGCTGGCCTTC 8706858 Query 1455909 TTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGT 1455968 ||| || || ||||| || ||| ||||||||||| | ||||| | | ||||| Sbjct 8706857 TTT-GCTGCTTCGGATGGAATTGTGAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGT 8706799 Query 1455969 CCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTC 1456028 || | | ||||| || | || ||||| ||||| |||||||| |||||| | ||||| Sbjct 8706798 TCAGGTCACGGAGGCGCGCTGTTTCTACGGTTTCCAAATCGCCATGGAAAACGTGCACTC 8706739 Query 1456029 TGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCT 1456088 ||| | ||| | || ||||| || ||| | || || | || || |||| Sbjct 8706738 TGAGATGTACAGTGTGCTCATCGATACTTACATTCGAGATCCCCACCAGCGTGAATACCT 8706679 Query 1456089 CTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTG 1456148 || ||||| || ||| |||| |||||| | ||||| || ||||| || || Sbjct 8706678 GTTCAATGCCATTGAGACGATGCCTGCGGTGAAGCGCAAGGCAGATTGGGCTCTGGCCTG 8706619 Query 1456149 GATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAG 1456207 ||| | || | | | | |||||| ||||| || ||| ||||| | ||| ||| Sbjct 8706618 GAT-TTCTTCGAAGTCAGCCA-ACTTTGGGGAGCGCATCATCGCATTTGCTGCCGTGGAG 8706561 Query 1456208 GGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATG 1456267 || || || ||| ||||| || | | ||||| ||| | |||||||| || | ||| Sbjct 8706560 GGTATATTCTTCAGCGGCAGCTTTGCCTCTATCTTCTGGTTGAAGAAGCGAGGTTTGATG 8706501 Query 1456268 CCCGGTCT 1456275 |||||||| Sbjct 8706500 CCCGGTCT 8706493 >seq13745 Length=6960332 Score = 114 bits (126), Expect = 2e-19 Identities = 204/294 (69%), Gaps = 9/294 (3%) Strand=Plus/Minus Query 1817479 AGGGCGTCCATGACCAGGCCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGG 1817538 |||| |||| || | ||| |||| |||||||||||||||||||| | | ||| || Sbjct 509425 AGGGTGTCCTGCACAATGCCCATGACGGGCTTGTTGGCCTGCGGCGTGATGATCTGCCGG 509366 Query 1817539 GCCACGTTCATGGTGTGCGTCACCTCGGCGCGCGCGTCTCA--GACTGGGGCACATGGAG 1817596 | | | | | ||| | |||||||||||||| || || ||||||||||| || || Sbjct 509365 GGCGTGATGTGGATGTTCTCCACCTCGGCGCGCGTCTC-CATCGACTGGGGCACGTGCAG 509307 Query 1817597 GTTCATCTCGTCGCCGTCAAAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCG 1817656 |||||||||||||||||| || ||||| ||||||| ||| | |||||| | || Sbjct 509306 GTTCATCTCGTCGCCGTCGAAATCGGCGTTGTAGGGCGATGTGCACGACAGGTTCATGCG 509247 Query 1817657 CATGGTACGGCCGGGCATGGGCAC---CACCTTGTGCATGAGCATGGAGCCCATGTGGAG 1817713 | ||| | ||||| |||| |||| ||||| | ||| | |||| || Sbjct 509246 GAAGGTGGACCAGGGCA---GCACCTTCACCCTGTGCCCCATCATACTCATCTTGTGCAG 509190 Query 1817714 TGAGGGCTGCCGGTTCATCACCACGGCGTCGCCGGCGCGCAGGTGACGCTCGAC 1817767 | ||||||||||| | | || |||| || ||||||| || ||||| || Sbjct 509189 CGTCGGCTGCCGGTTGAAGATGACCAGGTCGTCGTCGCGCAGATGCCGCTCCAC 509136 Score = 107 bits (118), Expect = 3e-17 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1818069 ATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACG 1818128 ||| | ||||||||||| ||||||| ||||| || ||| | |||| ||||| Sbjct 508996 ATGTTGAAGGGCGTCACCAGCTCGGGGAAGGTCAGATTCTGGGCGATGGAGCGCGGCACA 508937 Query 1818129 CCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTG 1818188 ||||||| ||| ||| | | ||| || || | ||||| | || |||| |||| Sbjct 508936 CCCACCTGGTCGATGCGCAGATTGGGATCCGGAGTAATGACAGTACGGGCGGAGAAGTCC 508877 Query 1818189 ACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCACG 1818248 || ||||||||||| | ||||| ||||| | ||||||||||||||| ||||| || | Sbjct 508876 ACACGCTTGCCCATCAAGTTGCCACGGATGCGGCCCTCCTTGCCCTTCAACCGGGCCTTG 508817 Query 1818249 AGGCCCTTGGTGGGCTTGCCCGAC 1818272 | | |||| |||||||| ||| Sbjct 508816 ATGGCCTTCAGCGGCTTGCCGGAC 508793 >seq13748 Length=23293914 Score = 87.8 bits (96), Expect = 3e-11 Identities = 198/295 (67%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 332924 GTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAG 332982 ||||| ||||||| || || | ||| || ||| | | | |||||||| |||| | | Sbjct 14555835 GTGTTACAGGCCAAAGCGAATCTCGTGGTGTTGCTGTAGATCTCCATGGTGCGAC-GTAA 14555893 Query 332983 GGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCG 333042 || || ||||| || ||| | || ||| |||||||| ||||| | |||||||| || Sbjct 14555894 CGCTTGCTGGGCGCCCTCCGTCATGCTGTCCGCCTCGTCAAGGATAACAATCTTGTGCCG 14555953 Query 333043 CCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTC 333102 || |||||| ||| ||| | ||| ||||| | ||||| || || || Sbjct 14555954 GCCACGCGGCAATGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTGCGGACCACATC 14556013 Query 333103 CACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAA 333162 | || || || | || ||||| || ||||| || || || | | | | ||||| Sbjct 14556014 GATTCCTCGTTCATTGGATGCGTTTAGCTCGAGGACAGCTTCCTTGTAGCTGTCTCCCAA 14556073 Query 333163 GAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 ||| | || ||||| ||| ||| | |||||||||||| ||| || || ||| Sbjct 14556074 GAGTATCCGGGCCAGACACTGAATGGTTGTGGTCTTGCCCACGCCAGGAGGTCCC 14556128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176485083679338