Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq13746 122 7e-23 seq13747 113 4e-20 >seq13746 Length=16180835 Score = 122 bits (134), Expect = 7e-23 Identities = 316/479 (66%), Gaps = 16/479 (3%) Strand=Plus/Minus Query 40947 AAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAA-----ATCCGATCCCGATA 41001 || || || |||||| || || || || || ||||| || |||| | | |||| Sbjct 795952 AAGGGTATCGATCAACTAAAGCATGTCATTGACACGATAAAGAAGAATCC--TTCGGATA 795895 Query 41002 GCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCAC 41061 | ||| || || ||| |||||||| || |||| | | ||||||||||| | Sbjct 795894 G---ACGGATCATCATGTCGGCGTGGAATCCTCTGGACATTCCAAAAATGGCATTGCCTC 795838 Query 41062 CTTGTCATTTGTTATGTCAGTTTTACGT-TTGCA-----ATGGTGAACTGTCATGTCAAT 41115 | || || | || ||||||||| || | || || ||||| || || || Sbjct 795837 CGTGCCACTGCTTGGCTCAGTTTTATGTCTCTCAGGAGCGCGGCGAACTCTCCTGCCAGC 795778 Query 41116 TGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTC 41175 |||||||| || | |||||||| || || || || || ||||| || ||||| Sbjct 795777 TGTATCAACGAAGCGCCGACATGGGCCTGGGTGTACCCTTCAACATTGCCTCCTATGCCT 795718 Query 41176 TGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGT 41235 || | || |||||||| || || || || | |||| |||||||| || || ||||| Sbjct 795717 TGTTGACCTATATGATCGCCCATGTCACTGGTCTAAAGCCTGGTGACTTCGTACACACTA 795658 Query 41236 TAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAA 41295 | ||||| ||| | ||| | |||||| | ||||| | || ||||| ||| Sbjct 795657 TGGGAGACACGCATGTATACCTAAATCACGTGGAGCCACTTCAGGAGCAACTTGAACGCG 795598 Query 41296 AACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTT 41355 | || | || || || | ||| ||||||| ||| || | ||||||| |||||| Sbjct 795597 AGCCGCGGCCCTTCCCCAAACTAGTTATTAAGCGCCAGGTGCAGGACATTGAAGATTTTC 795538 Query 41356 GCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATG 41414 || ||| || |||| || ||||||||| || || || || || | ||||||||| Sbjct 795537 GCTACGAGGACTTTGAAATTGTCGATTACAACCCCTATCCAAAGATAAAGATGGACATG 795479 >seq13747 Length=19884421 Score = 113 bits (124), Expect = 4e-20 Identities = 475/740 (64%), Gaps = 20/740 (3%) Strand=Plus/Minus Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 |||| || |||||||| || || || || || || || |||| || || | Sbjct 8706865 TGGCCTTCTTTGCTGCTTCGGATGGAATTGTGAACGAGAACCTGGTGGAGCGCTTCAGTC 8706806 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 | || ||||| | | || || || ||||| || || || ||||| ||||| ||||| Sbjct 8706805 AGGAGGTTCAGGTCACGGAGGCGCGCTGTTTCTACGGTTTCCAAATCGCCATGGAAAACG 8706746 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | || || || ||||||||| | || || ||||| ||||| |||| ||| || | Sbjct 8706745 TGCACTCTGAGATGTACAGTGTGCTCATCGATACTTACATTCGAGATCCCCACCAG---C 8706689 Query 44034 ATCGAT---TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGG 44090 | || |||| ||||| || || || | |||||| | || | || ||||| |||| Sbjct 8706688 GTGAATACCTGTTCAATGCCATTGAGACGATGCCTGCGGTGAAGCGCAAGGCAGATTGGG 8706629 Query 44091 CCCTTAAATGGATAAATTCAAA-TGATTCT--TTTGGAGAACGACTTGTCGCGTTTGCAG 44147 | || ||||| ||| || | | | ||||| || || | |||| ||||| | Sbjct 8706628 CTCTGGCCTGGATTTCTTCGAAGTCAGCCAACTTTGGGGAGCGCATCATCGCATTTGCTG 8706569 Query 44148 TTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAG 44207 ||||| || || ||||| || ||||| | || || ||||| ||||| |||| Sbjct 8706568 CCGTGGAGGGTATATTCTTCAGCGGCAGCTTTGCCTCTATCTTCTGGTTGAAGAAGCGAG 8706509 Query 44208 GTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATT 44267 |||||||||| || |||| || || || ||| | || | || ||||| | || | Sbjct 8706508 GTTTGATGCCCGGTCTGACCTTCTCCAACGAGCTTATCTCCAGGGACGAAGGTCTGCACT 8706449 Query 44268 GCGATTTTGCT-TGCTTGT-TACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGAC 44325 |||| || ||| ||||| | | | | | || | | | || || | || Sbjct 8706448 GCGACTTCGCTGTGCTTATGTTCCAGCACCTC-----GTCCAGAAACCACGTCGCGAGCG 8706394 Query 44326 AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATT 44385 || | || ||| | || || || | || || || || || | || || || Sbjct 8706393 CATCATCGAGATTATCCGCGATGCTGTGGACATTGAGCAGGAGTTCCTCACCGACGCCTT 8706334 Query 44386 ACCTGTAAATTTAATAGGAATGAA-TG-AACTTTTGATGAACCAATATATTGAATACATT 44443 || || ||||| || || ||||| || || |||||| ||||| || |||| | Sbjct 8706333 GCCCGTGAATTTGATCGGCATGAACTGCGAC--TTGATGTCGCAATACATCGAATTTGTG 8706276 Query 44444 GCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTT 44503 || || || |||| | || ||||| | ||| ||| | ||||||| || Sbjct 8706275 GCGGACCGGCTACTGGTAGAGCTGGGCGTAGGCAAAATCTACAACACCAAAAACCCTTTC 8706216 Query 44504 GATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGA 44563 |||| ||||| | || ||| |||| || || || ||||| |||||||| || ||| Sbjct 8706215 AATTTCATGGAGATGATCTCGCTGGACGGGAAGACCAACTTCTTTGAAAAGAAGGTGGGA 8706156 Query 44564 GAATATCAGCGAATGGGCGT 44583 || || ||||| |||||||| Sbjct 8706155 GAGTACCAGCGTATGGGCGT 8706136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397389399912745