Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq1080 127 8e-25 seq6246 107 7e-19 seq8867 89.7 2e-13 >seq1080 Length=1007 Score = 127 bits (140), Expect = 8e-25 Identities = 78/82 (95%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 4820 CCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGTGTCACC 4879 |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 924 CCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACC 983 Query 4880 CA-CATGCTGTACTGCACCTGG 4900 || ||||||||||||||||||| Sbjct 984 CATCATGCTGTACTGCACCTGG 1005 >seq6246 Length=1444 Score = 107 bits (118), Expect = 7e-19 Identities = 61/62 (98%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 4723 AGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCAT 4782 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 62 AGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCAT 3 Query 4783 GT 4784 || Sbjct 2 GT 1 >seq8867 Length=1954 Score = 89.7 bits (98), Expect = 2e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 22782 CATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCA-AAAAATACGCCCGGTAGTG 22840 ||| |||| ||| |||| || | ||||| || | ||| ||||||||||||| ||||| Sbjct 89 CATCTTAGGTTCATTAGGTCAATAGCATCTCCATCA-TCATAAAAATACGCCCGTTAGTG 147 Query 22841 ATCTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAA 22888 |||||||||||||| | || |||||||||||| || | | | |||||| Sbjct 148 ATCTTATTTCATTAAGCTGGAAGTTGGAACCTATTTCTTTCGGATCAA 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184414685812782