Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq13746 165 9e-36 seq13747 93.3 5e-14 >seq13746 Length=16180835 Score = 165 bits (182), Expect = 9e-36 Identities = 501/769 (65%), Gaps = 4/769 (1%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTG-AGACGTACG 53252 |||||||| || | || || || || || ||| | | || || ||||| |||||||| Sbjct 14159984 ATGCGCGTGGCAATCGGAATTCATGGAGAAGACATCGATGC-TG-CCGTGGAGACGTACA 14159927 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| || | | || || || ||||| ||||||| || || ||||| |||| Sbjct 14159926 ACTTGCTGTCCGAGCGTTATTTCACTCACGCTTCGCCAACACTTTTTGCCGCTGCCACGA 14159867 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||| || ||| ||||| ||| ||||| || | |||| | ||||| ||||| || | Sbjct 14159866 ATCGTCCCCAGCTGTCGTCCTGTTTCCTCCTGACCATGACTGCCGACTCCATCGAGGGTA 14159807 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||| | | || | || | || ||| |||||||||| | |||||||| ||| | Sbjct 14159806 TCTTCAAATCGGTTGAGCAATGCGCCATGATCTCCAAGTCTGCTGGTGGTATTGGTCTTA 14159747 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | | | ||||| || || || | || || ||||| ||| || ||| Sbjct 14159746 ACGTCCATTGCATTCGTGCAAAGGGTACCTCGATTTGCGGAACGAATGGCACATCCAATG 14159687 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | | || |||||||| | ||||| |||||| ||| ||||| || | |||||||||| Sbjct 14159686 GCCTGGTTCCTATGCTGAGAGTCTTTAACAACGTGGCGCGGTATGTGGATCAGGGTGGTG 14159627 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 | ||||| ||| | || ||||| || || ||||| ||||| | || | | |||| Sbjct 14159626 GCAAGCGGCCGGGAGCCTTTGCCATTTATCTGGAGCCCTGGCATTCGGATGTATTTGAGT 14159567 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 |||| || || |||| || | |||||| || ||| || |||| | Sbjct 14159566 TTCTGGACCTTAAGAAGAATACTGGCAAGGAAGAGCATCGAGCCCGCGATTTGTTCTATG 14159507 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | |||||||| || || ||||||||| || |||||| | ||||| |||| | | Sbjct 14159506 CCCTGTGGATACCAGATCTCTTCATGAAACGAGTGGAGGCCAATGAGGACTGGTCGTTAA 14159447 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 |||| || | | ||||| |||||||| | ||| | || || |||||| | | | | Sbjct 14159446 TGTGTCCCCATAAATGCCCTGGCCTCCATGATGTGTGGGGCGATGAGTTTGAAAAACTCT 14159387 Query 53793 ATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGG 53852 || || |||| | |||| ||| ||| | || || || | | ||| Sbjct 14159386 ATGTGAAATACGAACAGGAGGGACGCGCCAATCGAACTGTGAAAGCACAGTCCTTGTGGT 14159327 Query 53853 ATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGG 53912 ||| ||| | || || |||||||| |||| || |||||| | |||||| | Sbjct 14159326 TTGCTATCATTGAGTCGCAAGTGGAGACTGGAAATCCTTACATGCTGTTCAAGGACGCCT 14159267 Query 53913 TCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAA 53961 |||| ||||||||||| |||| | ||| ||| || | ||||| Sbjct 14159266 GCAACCGAAAGAGCAACCAACAGAATGTGGGCACCATTAAGTGCAGCAA 14159218 Score = 159 bits (176), Expect = 4e-34 Identities = 291/426 (68%), Gaps = 0/426 (0%) Strand=Plus/Minus Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209 ||||||| || || ||||| || || |||| ||||| ||| || | | ||| | || Sbjct 12128772 ACCCAGTGCCTATGCCCTCGGCTCCGTTCACCAGAACCATGGGAATAATAGGGAGATACC 12128713 Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCG 117269 || ||||| | | | | ||||| || || ||||| ||||| || || ||| || Sbjct 12128712 ACAGCGGCTCGATCCTCTGCCCGTCATCGGTCTGGTACTCGAGCAACGGATCGTCGAGCG 12128653 Query 117270 GATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAG 117329 ||| ||| || | ||||| ||| | | | |||||||||||||||| || || Sbjct 12128652 GATGGAAAATCAACCTGGTCAGCGGGGACATCAGGGTGAAAATGTAACGAGCACTGGCGC 12128593 Query 117330 CATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGT 117389 ||||||||| || | | || |||||||| || || | ||||||| || || | || Sbjct 12128592 AATCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCTCGGGGCTCCAGCAGATTAATGT 12128533 Query 117390 TGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCAC 117449 |||| | ||| ||| |||| || |||||||| || || || || || | |||| | Sbjct 12128532 TGTTCGAGCCGACATAGTTCTGGGCCAAGTTTACGATGGTCATCTGCAGTGACACCTCGC 12128473 Query 117450 CATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTG 117509 | || || || |||| | ||| ||||| | || | || ||| || ||||||| || Sbjct 12128472 CGTGATGGTAGGCCGACATCTCGGCCACTGAACCGGACAACTGGGCTACCTTCACTTCGC 12128413 Query 117510 ACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCAT 117569 | | ||| |||||| ||||| | || ||||||||||| | ||||||| |||| Sbjct 12128412 GCTTATCGTTTCTCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTCAAGCCAT 12128353 Query 117570 CCGCCA 117575 || ||| Sbjct 12128352 CCACCA 12128347 Score = 150 bits (166), Expect = 2e-31 Identities = 305/450 (68%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || |||||||| || ||||| ||||||| ||| || | ||||||| || || Sbjct 12128770 CCAGTGCCTATGCCCTCGGCTCCGTTCACCAGAACCATGGGAATAATAGGGAGATACCAC 12128711 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAA-AACGGAATTGTCAGCCGG 151994 |||||| | | || |||||||| || ||| | | |||||| | ||| ||| Sbjct 12128710 AGCGGCTCGATCCTCTGCCCGTCATCGGTCTGGTACTCGAGCAACGGA-TCGTCGAGCGG 12128652 Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054 || ||| ||| | |||| || || | ||||| ||||| || | ||||| Sbjct 12128651 ATGGAAAATCAACCTGGTCAGCGGGGACATCAGGGTGAAAATGTAACGAGCACTGGCGCA 12128592 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||||||||| || | || ||| || || ||||| || |||||| || || || | ||| Sbjct 12128591 ATCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCTCGGGGCTCCAGCAGATTAATGTT 12128532 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||| | ||| || | ||||| ||||| || || || || |||||| | | || || Sbjct 12128531 GTTCGAGCCGACATAGTTCTGGGCCAAGTTTACGATGGTCATCTGCAGTGACACCTCGCC 12128472 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 ||| || || |||| | ||| || | | || | |||||| || ||||||| || Sbjct 12128471 GTGATGGTAGGCCGACATCTCGGCCACTGAACCGGACAACTGGGCTACCTTCACTTCGCG 12128412 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 | | ||| |||||| |||| | | || |||||||||||| || ||||| || || Sbjct 12128411 CTTATCGTTTCTCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTCAAGCCATC 12128352 Query 152295 CACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||| ||||| || |||| | |||| Sbjct 12128351 CACCAGACTGGGAATGGAGCGCTCGTTGTC 12128322 >seq13747 Length=19884421 Score = 93.3 bits (102), Expect = 5e-14 Identities = 349/538 (65%), Gaps = 17/538 (3%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || ||| ||||||||| |||||||||||||| |||| |||||| ||||||| Sbjct 8706151 TACTCTCCCACCTTCTTTTCAAAGAAGTTGGTCTTCCCGTCCAGCGAGATCATCTCCATG 8706210 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580 | | ||||||||| || | ||| | | | || | ||| | || | ||| || | Sbjct 8706211 AAATTGAAAGGGTTTTTGGTGTTGTAGATTTTGCCTACGCCC--AGCTCTACCAGTAGCC 8706268 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCA-TCCATGCCGATGAGTTTG 74639 | ||||||||||||| ||||| |||| || | |||| | ||||||||| | || Sbjct 8706269 GGTCCGCCACAAATTCGATGTATTGCGACA-TCAAGTCGCAGTTCATGCCGATCAAATT- 8706326 Query 74640 CAC-GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTT 74698 ||| |||| || ||||||| ||||| ||| | || ||| ||| ||||| Sbjct 8706327 CACGGGCAAGGCGTCGGTGAGGAACTCCTGCTCAATGTCCACAGCATCGCGGATAATCTC 8706386 Query 74699 GTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACTC 74758 | ||| | | | | || | ||||| | | | ||| || || || Sbjct 8706387 GATGATGCGCTCGCGACGTGGTTTCTGGACGAGGTGCTGGAACATAAGCACAGCGAAGTC 8706446 Query 74759 CTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAG 74818 ||| ||||| || ||| || | || || || || | || || ||||| | Sbjct 8706447 GCAGTGCAGACCTTCGTCCCTGGAGATAAGCTCGTTGGAGAAGGTCAGACCGGGCATCAA 8706506 Query 74819 TCCACGCTTCTTCAACCAAAAGAT---GGCACAGAAGGAACCACTGAAGAAGATGCCTTC 74875 || |||||||||||||| ||||| |||| ||| || |||||||| || || || Sbjct 8706507 ACCTCGCTTCTTCAACCAGAAGATAGAGGCA---AAGCTGCCGCTGAAGAATATACCCTC 8706563 Query 74876 GACACACGCAAAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATCCAAGT 74932 || ||||| |||| | ||| | | | || | || | |||| ||||| | Sbjct 8706564 CACGGCAGCAAATGCGATGATGCGCTCCCCAAAGTTGGCTGACTTCGAAGAAATCCAGGC 8706623 Query 74933 CTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG 74990 | ||||||| || || || || || |||||||| | || || || || | ||| ||| Sbjct 8706624 CAGAGCCCAATCTGCCTTGCGCTTCACCGCAGGCATCGTCTCAATGGCATTGAACAGG 8706681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547121954090200