Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq5045 192 2e-44 seq3172 192 2e-44 seq1863 192 2e-44 seq868 192 2e-44 seq6530 188 2e-43 seq3415 140 1e-28 seq13086 136 1e-27 seq3521 136 1e-27 >seq5045 Length=1327 Score = 192 bits (212), Expect = 2e-44 Identities = 295/418 (71%), Gaps = 2/418 (0%) Strand=Plus/Minus Query 38819 TAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGT 38878 || |||||||| ||||| | | |||| | || | | || ||| |||| |||| | Sbjct 1082 TAGATTTTCTTTCTAAAGATGATATTGTAACACTCATCTTGCATGGTTCTATGAAACCTT 1023 Query 38879 TCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTT 38938 || || || ||||| ||||| ||| || |||| ||| | | ||| || |||| | | Sbjct 1022 TCACATATGCCATTAGTCTGTGGAGAGTTGGCTTTAGTTCTAGAATGATCGATGTTTTCT 963 Query 38939 ATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGG 38998 || | |||||||||| |||| |||||||||| ||||||||| || || | || | Sbjct 962 ATGCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTA 903 Query 38999 TCAGTTAATATGCGTAACATCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATC 39057 |||||||| |||||||| | || || | ||| ||||| |||| | ||| |||| Sbjct 902 TCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATC 844 Query 39058 ATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 39117 || || | ||| ||||| | ||||| || | || |||||||| | | || || Sbjct 843 GTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAAC 784 Query 39118 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 39177 | | |||||||||| ||| ||||| |||||||| || || | ||||||| ||||| Sbjct 783 TCTGGAATAAGTATCAACAAAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCC 724 Query 39178 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 39235 |||||| | |||||||| || || | ||| || || ||| ||| |||||||||||| Sbjct 723 CACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 666 >seq3172 Length=1171 Score = 192 bits (212), Expect = 2e-44 Identities = 295/418 (71%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 38819 TAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGT 38878 || |||||||| ||||| | | |||| | || | | || ||| |||| |||| | Sbjct 243 TAGATTTTCTTTCTAAAGATGATATTGTAACACTCATCTTGCATGGTTCTATGAAACCTT 302 Query 38879 TCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTT 38938 || || || ||||| ||||| ||| || |||| ||| | | ||| || |||| | | Sbjct 303 TCACATATGCCATTAGTCTGTGGAGAGTTGGCTTTAGTTCTAGAATGATCGATGTTTTCT 362 Query 38939 ATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGG 38998 || | |||||||||| |||| |||||||||| ||||||||| || || | || | Sbjct 363 ATGCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTA 422 Query 38999 TCAGTTAATATGCGTAACATCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATC 39057 |||||||| |||||||| | || || | ||| ||||| |||| | ||| |||| Sbjct 423 TCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATC 481 Query 39058 ATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 39117 || || | ||| ||||| | ||||| || | || |||||||| | | || || Sbjct 482 GTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAAC 541 Query 39118 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 39177 | | |||||||||| ||| ||||| |||||||| || || | ||||||| ||||| Sbjct 542 TCTGGAATAAGTATCAACAAAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCC 601 Query 39178 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 39235 |||||| | |||||||| || || | ||| || || ||| ||| |||||||||||| Sbjct 602 CACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 659 >seq1863 Length=1071 Score = 192 bits (212), Expect = 2e-44 Identities = 295/418 (71%), Gaps = 2/418 (0%) Strand=Plus/Minus Query 38819 TAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGT 38878 || |||||||| ||||| | | |||| | || | | || ||| |||| |||| | Sbjct 829 TAGATTTTCTTTCTAAAGATGATATTGTAACACTCATCTTGCATGGTTCTATGAAACCTT 770 Query 38879 TCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTT 38938 || || || ||||| ||||| ||| || |||| ||| | | ||| || |||| | | Sbjct 769 TCACATATGCCATTAGTCTGTGGAGAGTTGGCTTTAGTTCTAGAATGATCGATGTTTTCT 710 Query 38939 ATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGG 38998 || | |||||||||| |||| |||||||||| ||||||||| || || | || | Sbjct 709 ATGCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTA 650 Query 38999 TCAGTTAATATGCGTAACATCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATC 39057 |||||||| |||||||| | || || | ||| ||||| |||| | ||| |||| Sbjct 649 TCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATC 591 Query 39058 ATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 39117 || || | ||| ||||| | ||||| || | || |||||||| | | || || Sbjct 590 GTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAAC 531 Query 39118 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 39177 | | |||||||||| ||| ||||| |||||||| || || | ||||||| ||||| Sbjct 530 TCTGGAATAAGTATCAACAAAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCC 471 Query 39178 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 39235 |||||| | |||||||| || || | ||| || || ||| ||| |||||||||||| Sbjct 470 CACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 413 >seq868 Length=971 Score = 192 bits (212), Expect = 2e-44 Identities = 295/418 (71%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 38819 TAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGT 38878 || |||||||| ||||| | | |||| | || | | || ||| |||| |||| | Sbjct 184 TAGATTTTCTTTCTAAAGATGATATTGTAACACTCATCTTGCATGGTTCTATGAAACCTT 243 Query 38879 TCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTT 38938 || || || ||||| ||||| ||| || |||| ||| | | ||| || |||| | | Sbjct 244 TCACATATGCCATTAGTCTGTGGAGAGTTGGCTTTAGTTCTAGAATGATCGATGTTTTCT 303 Query 38939 ATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGG 38998 || | |||||||||| |||| |||||||||| ||||||||| || || | || | Sbjct 304 ATGCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTA 363 Query 38999 TCAGTTAATATGCGTAACATCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATC 39057 |||||||| |||||||| | || || | ||| ||||| |||| | ||| |||| Sbjct 364 TCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATC 422 Query 39058 ATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 39117 || || | ||| ||||| | ||||| || | || |||||||| | | || || Sbjct 423 GTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAAC 482 Query 39118 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 39177 | | |||||||||| ||| ||||| |||||||| || || | ||||||| ||||| Sbjct 483 TCTGGAATAAGTATCAACAAAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCC 542 Query 39178 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 39235 |||||| | |||||||| || || | ||| || || ||| ||| |||||||||||| Sbjct 543 CACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 600 >seq6530 Length=1475 Score = 188 bits (208), Expect = 2e-43 Identities = 269/376 (72%), Gaps = 2/376 (1%) Strand=Plus/Plus Query 38861 ATTGTTTTATGGAACCGTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTC 38920 || ||| |||| |||| ||| || || ||||| ||||| ||| || |||| ||| | Sbjct 338 ATGGTTCTATGAAACCTTTCTCATATGCCATTAGTCTGTGGAGAGTTGGCTTTAGTTCTA 397 Query 38921 GTATGCTCTATGTCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCA 38980 | ||| || |||| | ||| | |||||||||| |||| |||||||||| ||||||| Sbjct 398 GAATGATCGATGTTTTCTATGCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCA 457 Query 38981 CAATATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTT-TCAAA 39039 || || || | || | |||||||| |||||||| | || || | ||| ||||| Sbjct 458 CAGTACTCCGTACCCCTATCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAA 516 Query 39040 GTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATA 39099 |||| | ||| |||| || || | ||| ||||| | ||||| || | || || Sbjct 517 AAATGGAATAACTCTATCGTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTA 576 Query 39100 AAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACC 39159 |||||| | | || ||| | |||||||||| ||| ||||| |||||||| || || Sbjct 577 AAGTTTAACCATTGCAACTCTGGAATAAGTATCAACAAAAGTTTGCTGATAAATGCGCCC 636 Query 39160 CACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTAC 39219 | ||||||| ||||||||||| | |||||||| || || | ||| || || ||| Sbjct 637 TATACCTTTGATATTGCCCACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTG 696 Query 39220 CGTTTCAATTTCACCA 39235 ||| |||||||||||| Sbjct 697 CGTCTCAATTTCACCA 712 >seq3415 Length=1189 Score = 140 bits (154), Expect = 1e-28 Identities = 201/281 (72%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 38956 ATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAA 39015 |||| |||||||||| ||||||||| || || | || | |||||||| |||||||| Sbjct 1 ATAAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTATCAGTTAAAATGCGTAA 60 Query 39016 CATCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAG 39074 | || || | ||| ||||| |||| | ||| |||| || || | ||| |||| Sbjct 61 TAATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATCGTTGAGAAGATCTGCAG 119 Query 39075 CACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAA 39134 | | ||||| || | || |||||||| | | || ||| | |||||||||| Sbjct 120 CTGTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAACTCTGGAATAAGTATCAA 179 Query 39135 TAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTT 39194 ||| ||||| |||||||| || || | ||||||| ||||||||||| | ||||||| Sbjct 180 CAAAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCCCACATAATAGGTATCTT 239 Query 39195 GTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 39235 | || || | ||| || || ||| ||| |||||||||||| Sbjct 240 GAGAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 280 >seq13086 Length=11057 Score = 136 bits (150), Expect = 1e-27 Identities = 199/279 (71%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 38958 AATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACA 39017 || |||||||||| ||||||||| || || | || | |||||||| |||||||| | Sbjct 984 AAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTATCAGTTAAAATGCGTAATA 925 Query 39018 TCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCA 39076 || || | ||| ||||| |||| | ||| |||| || || | ||| ||||| Sbjct 924 ATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATCGTTGAGAAGATCTGCAGCT 866 Query 39077 CTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATA 39136 | ||||| || | || |||||||| | | || ||| | |||||||||| | Sbjct 865 GTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAACTCTGGAATAAGTATCAACA 806 Query 39137 AACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGT 39196 || ||||| |||||||| || || | ||||||| ||||||||||| | |||||||| Sbjct 805 AAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCCCACATAATAGGTATCTTGA 746 Query 39197 GAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 39235 || || | ||| || || ||| ||| |||||||||||| Sbjct 745 GAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 707 >seq3521 Length=1198 Score = 136 bits (150), Expect = 1e-27 Identities = 199/279 (71%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 38958 AATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACA 39017 || |||||||||| ||||||||| || || | || | |||||||| |||||||| | Sbjct 409 AAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTATCAGTTAAAATGCGTAATA 468 Query 39018 TCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCA 39076 || || | ||| ||||| |||| | ||| |||| || || | ||| ||||| Sbjct 469 ATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATCGTTGAGAAGATCTGCAGCT 527 Query 39077 CTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATA 39136 | ||||| || | || |||||||| | | || ||| | |||||||||| | Sbjct 528 GTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAACTCTGGAATAAGTATCAACA 587 Query 39137 AACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGT 39196 || ||||| |||||||| || || | ||||||| ||||||||||| | |||||||| Sbjct 588 AAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCCCACATAATAGGTATCTTGA 647 Query 39197 GAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 39235 || || | ||| || || ||| ||| |||||||||||| Sbjct 648 GAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160101856001520