Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq5045 183 7e-42 seq3172 183 7e-42 seq1863 183 7e-42 seq868 183 7e-42 seq6530 179 8e-41 seq3415 140 7e-29 seq13086 136 9e-28 seq3521 136 9e-28 >seq5045 Length=1327 Score = 183 bits (202), Expect = 7e-42 Identities = 293/418 (70%), Gaps = 2/418 (0%) Strand=Plus/Minus Query 24615 TAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGT 24674 || |||||||| ||||| | | |||| | || | | || ||| |||| |||| | Sbjct 1082 TAGATTTTCTTTCTAAAGATGATATTGTAACACTCATCTTGCATGGTTCTATGAAACCTT 1023 Query 24675 TCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTT 24734 || || ||||| |||||||| ||| || | || ||| || || || || | | | Sbjct 1022 TCACATATGCCATTAGTCTGTGGAGAGTTGGCTTTAGTTCTAGAATGATCGATGTTTTCT 963 Query 24735 ATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGG 24794 || | |||||||||| |||| |||||||||| ||||||||| || || | || | Sbjct 962 ATGCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTA 903 Query 24795 TCAGTTAATATGCGTAACATCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATC 24853 |||||||| |||||||| | || || | ||| ||||| |||| | ||| |||| Sbjct 902 TCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATC 844 Query 24854 ATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 24913 || || | ||| ||||| | ||||| || | || |||||||| | | || || Sbjct 843 GTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAAC 784 Query 24914 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 24973 | | |||||||||| ||| ||||| |||||||| || || | ||||||| ||||| Sbjct 783 TCTGGAATAAGTATCAACAAAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCC 724 Query 24974 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 |||||| | |||||||| || || | ||| || || ||| ||| |||||||||||| Sbjct 723 CACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 666 >seq3172 Length=1171 Score = 183 bits (202), Expect = 7e-42 Identities = 293/418 (70%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 24615 TAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGT 24674 || |||||||| ||||| | | |||| | || | | || ||| |||| |||| | Sbjct 243 TAGATTTTCTTTCTAAAGATGATATTGTAACACTCATCTTGCATGGTTCTATGAAACCTT 302 Query 24675 TCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTT 24734 || || ||||| |||||||| ||| || | || ||| || || || || | | | Sbjct 303 TCACATATGCCATTAGTCTGTGGAGAGTTGGCTTTAGTTCTAGAATGATCGATGTTTTCT 362 Query 24735 ATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGG 24794 || | |||||||||| |||| |||||||||| ||||||||| || || | || | Sbjct 363 ATGCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTA 422 Query 24795 TCAGTTAATATGCGTAACATCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATC 24853 |||||||| |||||||| | || || | ||| ||||| |||| | ||| |||| Sbjct 423 TCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATC 481 Query 24854 ATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 24913 || || | ||| ||||| | ||||| || | || |||||||| | | || || Sbjct 482 GTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAAC 541 Query 24914 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 24973 | | |||||||||| ||| ||||| |||||||| || || | ||||||| ||||| Sbjct 542 TCTGGAATAAGTATCAACAAAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCC 601 Query 24974 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 |||||| | |||||||| || || | ||| || || ||| ||| |||||||||||| Sbjct 602 CACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 659 >seq1863 Length=1071 Score = 183 bits (202), Expect = 7e-42 Identities = 293/418 (70%), Gaps = 2/418 (0%) Strand=Plus/Minus Query 24615 TAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGT 24674 || |||||||| ||||| | | |||| | || | | || ||| |||| |||| | Sbjct 829 TAGATTTTCTTTCTAAAGATGATATTGTAACACTCATCTTGCATGGTTCTATGAAACCTT 770 Query 24675 TCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTT 24734 || || ||||| |||||||| ||| || | || ||| || || || || | | | Sbjct 769 TCACATATGCCATTAGTCTGTGGAGAGTTGGCTTTAGTTCTAGAATGATCGATGTTTTCT 710 Query 24735 ATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGG 24794 || | |||||||||| |||| |||||||||| ||||||||| || || | || | Sbjct 709 ATGCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTA 650 Query 24795 TCAGTTAATATGCGTAACATCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATC 24853 |||||||| |||||||| | || || | ||| ||||| |||| | ||| |||| Sbjct 649 TCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATC 591 Query 24854 ATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 24913 || || | ||| ||||| | ||||| || | || |||||||| | | || || Sbjct 590 GTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAAC 531 Query 24914 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 24973 | | |||||||||| ||| ||||| |||||||| || || | ||||||| ||||| Sbjct 530 TCTGGAATAAGTATCAACAAAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCC 471 Query 24974 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 |||||| | |||||||| || || | ||| || || ||| ||| |||||||||||| Sbjct 470 CACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 413 >seq868 Length=971 Score = 183 bits (202), Expect = 7e-42 Identities = 293/418 (70%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 24615 TAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGT 24674 || |||||||| ||||| | | |||| | || | | || ||| |||| |||| | Sbjct 184 TAGATTTTCTTTCTAAAGATGATATTGTAACACTCATCTTGCATGGTTCTATGAAACCTT 243 Query 24675 TCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTT 24734 || || ||||| |||||||| ||| || | || ||| || || || || | | | Sbjct 244 TCACATATGCCATTAGTCTGTGGAGAGTTGGCTTTAGTTCTAGAATGATCGATGTTTTCT 303 Query 24735 ATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGG 24794 || | |||||||||| |||| |||||||||| ||||||||| || || | || | Sbjct 304 ATGCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTA 363 Query 24795 TCAGTTAATATGCGTAACATCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATC 24853 |||||||| |||||||| | || || | ||| ||||| |||| | ||| |||| Sbjct 364 TCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATC 422 Query 24854 ATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 24913 || || | ||| ||||| | ||||| || | || |||||||| | | || || Sbjct 423 GTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAAC 482 Query 24914 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 24973 | | |||||||||| ||| ||||| |||||||| || || | ||||||| ||||| Sbjct 483 TCTGGAATAAGTATCAACAAAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCC 542 Query 24974 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 |||||| | |||||||| || || | ||| || || ||| ||| |||||||||||| Sbjct 543 CACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 600 >seq6530 Length=1475 Score = 179 bits (198), Expect = 8e-41 Identities = 267/376 (71%), Gaps = 2/376 (1%) Strand=Plus/Plus Query 24657 ATTGTTTTATGGAACCGTTCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTA 24716 || ||| |||| |||| ||| || ||||| |||||||| ||| || | || ||| || Sbjct 338 ATGGTTCTATGAAACCTTTCTCATATGCCATTAGTCTGTGGAGAGTTGGCTTTAGTTCTA 397 Query 24717 CTGTGTTCAATATCATTTATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCA 24776 || || || | | ||| | |||||||||| |||| |||||||||| ||||||| Sbjct 398 GAATGATCGATGTTTTCTATGCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCA 457 Query 24777 CAATATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTT-TCAAA 24835 || || || | || | |||||||| |||||||| | || || | ||| ||||| Sbjct 458 CAGTACTCCGTACCCCTATCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAA 516 Query 24836 GTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATA 24895 |||| | ||| |||| || || | ||| ||||| | ||||| || | || || Sbjct 517 AAATGGAATAACTCTATCGTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTA 576 Query 24896 AAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACC 24955 |||||| | | || ||| | |||||||||| ||| ||||| |||||||| || || Sbjct 577 AAGTTTAACCATTGCAACTCTGGAATAAGTATCAACAAAAGTTTGCTGATAAATGCGCCC 636 Query 24956 CACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGC 25015 | ||||||| ||||||||||| | |||||||| || || | ||| || || ||| Sbjct 637 TATACCTTTGATATTGCCCACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTG 696 Query 25016 CGTTTCAATTTCACCA 25031 ||| |||||||||||| Sbjct 697 CGTCTCAATTTCACCA 712 >seq3415 Length=1189 Score = 140 bits (154), Expect = 7e-29 Identities = 201/281 (72%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 24752 ATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAA 24811 |||| |||||||||| ||||||||| || || | || | |||||||| |||||||| Sbjct 1 ATAAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTATCAGTTAAAATGCGTAA 60 Query 24812 CATCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAG 24870 | || || | ||| ||||| |||| | ||| |||| || || | ||| |||| Sbjct 61 TAATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATCGTTGAGAAGATCTGCAG 119 Query 24871 CACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAA 24930 | | ||||| || | || |||||||| | | || ||| | |||||||||| Sbjct 120 CTGTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAACTCTGGAATAAGTATCAA 179 Query 24931 TAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTT 24990 ||| ||||| |||||||| || || | ||||||| ||||||||||| | ||||||| Sbjct 180 CAAAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCCCACATAATAGGTATCTT 239 Query 24991 GTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 | || || | ||| || || ||| ||| |||||||||||| Sbjct 240 GAGAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 280 >seq13086 Length=11057 Score = 136 bits (150), Expect = 9e-28 Identities = 199/279 (71%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 24754 AATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACA 24813 || |||||||||| ||||||||| || || | || | |||||||| |||||||| | Sbjct 984 AAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTATCAGTTAAAATGCGTAATA 925 Query 24814 TCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCA 24872 || || | ||| ||||| |||| | ||| |||| || || | ||| ||||| Sbjct 924 ATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATCGTTGAGAAGATCTGCAGCT 866 Query 24873 CTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATA 24932 | ||||| || | || |||||||| | | || ||| | |||||||||| | Sbjct 865 GTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAACTCTGGAATAAGTATCAACA 806 Query 24933 AACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGT 24992 || ||||| |||||||| || || | ||||||| ||||||||||| | |||||||| Sbjct 805 AAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCCCACATAATAGGTATCTTGA 746 Query 24993 GAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 || || | ||| || || ||| ||| |||||||||||| Sbjct 745 GAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 707 >seq3521 Length=1198 Score = 136 bits (150), Expect = 9e-28 Identities = 199/279 (71%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 24754 AATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACA 24813 || |||||||||| ||||||||| || || | || | |||||||| |||||||| | Sbjct 409 AAGCGTGATTTTCGGGCTTGCCACAGTACTCCGTACCCCTATCAGTTAAAATGCGTAATA 468 Query 24814 TCGGTAAACCTTGGCTT-TCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCA 24872 || || | ||| ||||| |||| | ||| |||| || || | ||| ||||| Sbjct 469 ATGG-AATTTTCTGCTCATCAAAAAATGGAATAACTCTATCGTTGAGAAGATCTGCAGCT 527 Query 24873 CTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATA 24932 | ||||| || | || |||||||| | | || ||| | |||||||||| | Sbjct 528 GTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCAACTCTGGAATAAGTATCAACA 587 Query 24933 AACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGT 24992 || ||||| |||||||| || || | ||||||| ||||||||||| | |||||||| Sbjct 588 AAAGTTTGCTGATAAATGCGCCCTATACCTTTGATATTGCCCACATAATAGGTATCTTGA 647 Query 24993 GAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 || || | ||| || || ||| ||| |||||||||||| Sbjct 648 GAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114304534522588