Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq1080 113 2e-20 seq6246 95.1 5e-15 >seq1080 Length=1007 Score = 113 bits (124), Expect = 2e-20 Identities = 75/82 (91%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 1909 CCTTCACGCTTCATGCGCGGGTCATAGTTGGCGAAGTACCAGGCATCTTTTCGAGTCACC 1968 |||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |||||| Sbjct 924 CCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACC 983 Query 1969 CA-CATGCTGAATTGCACCTGG 1989 || ||||||| | ||||||||| Sbjct 984 CATCATGCTGTACTGCACCTGG 1005 >seq6246 Length=1444 Score = 95.1 bits (104), Expect = 5e-15 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 1812 AGCCAGTGCTTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACCAGCCAT 1871 ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 62 AGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCAT 3 Query 1872 GT 1873 || Sbjct 2 GT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194646614979306