Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ananassae_20[refseq_20GCF_5F000005115.1_202006-06-30] 13,749 sequences; 230,993,012 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq13745 102 7e-17 seq13748 89.7 4e-13 seq13746 82.4 7e-11 >seq13745 Length=6960332 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | ||| | |||||| || || || ||| || || || || || || Sbjct 842503 CATGCCTCCGCGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 842562 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| |||| || ||||| ||||| || || || ||||||||||| || | Sbjct 842563 GGACAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 842622 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| ||| || || | || | | |||||| | ||| Sbjct 842623 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAGGGCTC 842682 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || |||| ||||| | || || ||||| || || || || ||||||||||| Sbjct 842683 GACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATCTT 842736 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | ||| | |||||| || || || ||| || || || || || || Sbjct 841591 CATGCCTCCGCGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 841650 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| |||| || ||||| ||||| || || || ||||||||||| || | Sbjct 841651 GGACAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 841710 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| ||| || || | || | | || ||| | ||| Sbjct 841711 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGAGGGCTC 841770 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 841771 GACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 841821 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | ||| | ||||| ||| || || ||| || || || || || || Sbjct 841819 CATGCCTCCGCGGAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 841878 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| |||| || ||||| || || || || || ||||||||||| || | Sbjct 841879 GGACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGG 841938 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| ||| || || | || | | || ||| | ||| Sbjct 841939 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGAGGGCTC 841998 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| |||| || ||||| || || || ||||| ||||| Sbjct 841999 GACCTCCAGGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 842049 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | ||| | |||||| || || || ||| || || || || || || Sbjct 842047 CATGCCTCCGCGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 842106 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| |||| || ||||| ||||| || || || ||||||||||| || | Sbjct 842107 GGACAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 842166 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || ||| |||||| ||| || || | || | | || ||| | ||| Sbjct 842167 AGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGAGGGCTC 842226 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 842227 GACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 842277 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | || | |||||| || || || ||| || || || || || || Sbjct 842275 CATGCCTCCACGCAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 842334 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| |||| || ||||| || || || || || ||||||||||| || | Sbjct 842335 GGACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGG 842394 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| ||| || |||| || | | || ||| | ||| Sbjct 842395 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGAGGGCTC 842454 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 842455 GACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 842505 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | || | |||||| || || || ||| || || || || || || Sbjct 841363 CATGCCTCCACGCAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 841422 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| |||| || ||||| ||||| || || || ||||||||||| || | Sbjct 841423 GGACAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 841482 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || ||| |||||| ||| || || | || | | || ||| | ||| Sbjct 841483 AGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGAGGGCTC 841542 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 841543 GACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 841593 >seq13748 Length=23293914 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| || || || || || || | || || || | || || Sbjct 9537203 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGGCCATCCTCG 9537144 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || || | |||||||||||| | ||| | | ||| |||||| | Sbjct 9537143 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 9537084 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || ||||| || | | || ||| | |||||| |||| ||||| ||||| Sbjct 9537083 ATCTTGGCTTTGACGTTCTCAATGGTGTCGGAGGGCTCCACCTCCAGGGTGATGGTTTTT 9537024 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| || ||||| ||||| Sbjct 9537023 CCAGTCAAGGTTTTCACGAAGATCTGCAT 9536995 >seq13746 Length=16180835 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || || ||| || || || || || |||| ||| || || | || || Sbjct 2088076 CACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTC 2088017 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || ||||||||||| || | || | || |||||||||| Sbjct 2088016 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCCTCTTTGTCCTG 2087957 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | || | | || || || ||| || || | ||||| | || Sbjct 2087956 GATCTTAGCCTTCACATTCTCGATGGTGTCCGACGGCTCGACCTCGAGGGTGATGGTCTT 2087897 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||| || ||||||||||| Sbjct 2087896 GCCGGTGAGGGTTTTCACGAAGATTTGCAT 2087867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429473622788837