Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 3e-13 seq1 91.5 3e-13 seq2 84.2 5e-11 >seq4 Length=23952536 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 19006443 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 19006502 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 19006503 CCCCACGTTGGGC 19006515 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/79 (86%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 165703 AACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG 165762 ||||| ||||| ||||||||||||||||||| ||||| ||||||| ||||||||| Sbjct 22952225 AACGC--GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGG 22952168 Query 165763 TTCGAGCCCCACGATGGGC 165781 ||||||||||||| ||||| Sbjct 22952167 TTCGAGCCCCACGTTGGGC 22952149 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 22955040 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 22954981 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 22954980 CCCCACGTTGGGC 22954968 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 22988062 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 22988121 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 22988122 CCCCACGTTGGGC 22988134 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 863988 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 864047 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 864048 CCCACGTTGGGC 864059 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 21774078 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 21774137 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 21774138 CCCACGTTGGGC 21774149 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 22938376 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 22938317 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22938316 CCCACGTTGGGC 22938305 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 22955593 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 22955652 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22955653 CCCACGTTGGGC 22955664 >seq1 Length=29979347 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3000089 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3000030 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3000029 CCCCACGTTGGGC 3000017 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 25054307 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 25054366 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 25054367 CCCCACGTTGGGC 25054379 >seq2 Length=27840087 Score = 84.2 bits (92), Expect = 5e-11 Identities = 164/240 (68%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 61254 TTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCG 61313 ||||||||||||||||| | || | | |||||||| ||||||||||| || Sbjct 1517137 TTCAATCACGAGAGTCCGCGACGTGGCGAAAACTTTGTGACACGTAAAATTACCCGATCG 1517196 Query 61314 GTTGCAAATATTT--TTAACGGTGTCGAA--AAATGCATGTATCTAGGAAACATAGACTC 61369 || || || |||| |||| || || ||| | | | || || ||| | ||||| Sbjct 1517197 GTAGCGAAGATTTTGTTAA----ATCAAATGGAATACTTTGAGCTGGGCAACTTGGACTC 1517252 Query 61370 TAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACA 61429 ||| | ||||||||| |||| || ||| | ||||| |||||| ||||| |||| | Sbjct 1517253 AAAACGCGATTGGGGACATGCCAGCGACTATGTGGAGGCCATGTGGATGATGCTGCAGCG 1517312 Query 61430 AGATACTCCAGATGACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATTCGT 61489 || || || | || || || ||||| ||||| | ||| || || || ||||| || Sbjct 1517313 TGAGACGCCTGCAGATTATGTGATTGCAACTGGTGAAACGCACAGCGTGCGGGAATTTGT 1517372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057780927390140