Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4 188 7e-43 >seq4 Length=23952536 Score = 188 bits (208), Expect = 7e-43 Identities = 488/735 (66%), Gaps = 14/735 (2%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| | ||| || |||| ||| ||| ||||| |||||||| ||||| || || Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCC-AG 16782 || || ||||||| || || ||||| | | | ||||| | || || || Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTT-GCCAACACCGAG 3358271 Query 16783 TTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCAT 16842 ||| | | | | |||||| |||||||| ||||| | | |||| ||| | || ||||| Sbjct 3358272 TTCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCAT 3358331 Query 16843 TCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTC 16902 || || | || || ||||| || || | ||| |||||| || ||| || || Sbjct 3358332 GCCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATC 3358391 Query 16903 CTTAATAATACTAGCAACTCGTTC----CTCGGACGGTGTATGTTTAAGATGTTTAAACA 16958 || || | | || || || ||||| || | | ||| |||| Sbjct 3358392 AGAGATGATCTCAATGATGCGCTCACGGCTAGGACGTTGCACC----AAATGCCGGAACA 3358447 Query 16959 TCAG-ACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 ||| ||| || || || ||||| || |||||||| | ||| | || || || || Sbjct 3358448 TCATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAG 3358506 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 |||| ||||||||| || |||||||| | |||||| |||| ||| || ||| | Sbjct 3358507 GTCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTA 3358566 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTTT 17136 ||||| || ||||| |||| || ||||| || | || ||| | | |||| | ||| Sbjct 3358567 AAGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTC 3358626 Query 17137 GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196 | | |||||| || |||| ||||| ||| |||| | ||| ||||| || Sbjct 3358627 GATGA-AATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAAT 3358685 Query 17197 GGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 ||| || || | | || ||||||| | || | ||||| |||||||| || | ||| Sbjct 3358686 GGCATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCT 3358745 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 |||||| || ||||| | ||||||||||| || ||||| || || || || || ||||| Sbjct 3358746 GTACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTC 3358805 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | |||||| || ||| | ||| || || | ||||| || || || ||||| ||| Sbjct 3358806 GGTTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGA 3358865 Query 17377 CGCGGCGAAAAACGC 17391 ||||| || || || Sbjct 3358866 GGCGGCAAAGAAGGC 3358880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517525040501040