Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq4 188 7e-43
>seq4
Length=23952536
Score = 188 bits (208), Expect = 7e-43
Identities = 488/735 (66%), Gaps = 14/735 (2%)
Strand=Plus/Plus
Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723
|| ||||| | ||| || |||| ||| ||| ||||| |||||||| ||||| || ||
Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212
Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCC-AG 16782
|| || ||||||| || || ||||| | | | ||||| | || || ||
Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTT-GCCAACACCGAG 3358271
Query 16783 TTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCAT 16842
||| | | | | |||||| |||||||| ||||| | | |||| ||| | || |||||
Sbjct 3358272 TTCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCAT 3358331
Query 16843 TCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTC 16902
|| || | || || ||||| || || | ||| |||||| || ||| || ||
Sbjct 3358332 GCCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATC 3358391
Query 16903 CTTAATAATACTAGCAACTCGTTC----CTCGGACGGTGTATGTTTAAGATGTTTAAACA 16958
|| || | | || || || ||||| || | | ||| ||||
Sbjct 3358392 AGAGATGATCTCAATGATGCGCTCACGGCTAGGACGTTGCACC----AAATGCCGGAACA 3358447
Query 16959 TCAG-ACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017
||| ||| || || || ||||| || |||||||| | ||| | || || || ||
Sbjct 3358448 TCATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAG 3358506
Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077
|||| ||||||||| || |||||||| | |||||| |||| ||| || ||| |
Sbjct 3358507 GTCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTA 3358566
Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTTT 17136
||||| || ||||| |||| || ||||| || | || ||| | | |||| | |||
Sbjct 3358567 AAGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTC 3358626
Query 17137 GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196
| | |||||| || |||| ||||| ||| |||| | ||| ||||| ||
Sbjct 3358627 GATGA-AATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAAT 3358685
Query 17197 GGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256
||| || || | | || ||||||| | || | ||||| |||||||| || | |||
Sbjct 3358686 GGCATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCT 3358745
Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316
|||||| || ||||| | ||||||||||| || ||||| || || || || || |||||
Sbjct 3358746 GTACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTC 3358805
Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376
| |||||| || ||| | ||| || || | ||||| || || || ||||| |||
Sbjct 3358806 GGTTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGA 3358865
Query 17377 CGCGGCGAAAAACGC 17391
||||| || || ||
Sbjct 3358866 GGCGGCAAAGAAGGC 3358880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517525040501040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |